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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLTZ] human gut metagenome; faeces
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183308303
OLTZ01000994
[OLTZ] human gut metagenome; faeces
6
80
+
Val
TAC
[ENA]
¢þ
>WENV183308295
OLTZ01000353
[OLTZ] human gut metagenome; faeces
112
38
-
Glu
CTC
[ENA]
¢þ
>WENV183308301
OLTZ01000948
[OLTZ] human gut metagenome; faeces
173
98
-
Arg
CCT
[ENA]
¢þ
>WENV183308304
OLTZ01000994
[OLTZ] human gut metagenome; faeces
173
260
+
Leu
TAA
[ENA]
¢þ
>WENV183308302
OLTZ01000989
[OLTZ] human gut metagenome; faeces
239
167
-
Thr
CGT
[ENA]
¢þ
>WENV183308294
OLTZ01000353
[OLTZ] human gut metagenome; faeces
246
171
-
Lys
CTT
[ENA]
¢þ
>WENV183308289
OLTZ01000100
[OLTZ] human gut metagenome; faeces
256
328
+
Asn
GTT
[ENA]
¢þ
>WENV183308290
OLTZ01000100
[OLTZ] human gut metagenome; faeces
373
444
+
Glu
TTC
[ENA]
¢þ
>WENV183308298
OLTZ01000360
[OLTZ] human gut metagenome; faeces
377
304
-
Gly
GCC
[ENA]
¢þ
>WENV183308299
OLTZ01000388
[OLTZ] human gut metagenome; faeces
410
481
+
Trp
CCA
[ENA]
¢þ
>WENV183308300
OLTZ01000436
[OLTZ] human gut metagenome; faeces
428
344
-
Leu
GAG
[ENA]
¢þ
>WENV183308297
OLTZ01000360
[OLTZ] human gut metagenome; faeces
451
381
-
Gly
TCC
[ENA]
¢þ
>WENV183308291
OLTZ01000100
[OLTZ] human gut metagenome; faeces
493
565
+
Thr
TGT
[ENA]
¢þ
>WENV183308296
OLTZ01000360
[OLTZ] human gut metagenome; faeces
531
457
-
Pro
TGG
[ENA]
¢þ
>WENV183308292
OLTZ01000100
[OLTZ] human gut metagenome; faeces
586
661
+
fMet
CAT
[ENA]
¢þ
>WENV183308293
OLTZ01000184
[OLTZ] human gut metagenome; faeces
598
513
-
Leu
CAG
[ENA]
¢þ
>WENV183308288
OLTZ01000076
[OLTZ] human gut metagenome; faeces
947
871
-
Ile
GAT
[ENA]
¢þ
>WENV183308287
OLTZ01000076
[OLTZ] human gut metagenome; faeces
1043
970
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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