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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLUF] human gut metagenome; faeces
HIT:
56 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183308600
OLUF01001855
[OLUF] human gut metagenome; faeces
44
115
+
Cys
GCA
[ENA]
¢þ
>WENV183308595
OLUF01001753
[OLUF] human gut metagenome; faeces
59
133
+
Ala
CGC
[ENA]
¢þ
>WENV183308611
OLUF01003619
[OLUF] human gut metagenome; faeces
122
193
+
Trp
CCA
[ENA]
¢þ
>WENV183308583
OLUF01000426
[OLUF] human gut metagenome; faeces
126
52
-
Gln
TTG
[ENA]
¢þ
>WENV183308612
OLUF01003772
[OLUF] human gut metagenome; faeces
174
249
+
Arg
CCG
[ENA]
¢þ
>WENV183308582
OLUF01000426
[OLUF] human gut metagenome; faeces
208
134
-
His
GTG
[ENA]
¢þ
>WENV183308602
OLUF01002377
[OLUF] human gut metagenome; faeces
218
129
-
Ser
GCT
[ENA]
¢þ
>WENV183308597
OLUF01001798
[OLUF] human gut metagenome; faeces
233
306
+
Ala
TGC
[ENA]
¢þ
>WENV183308603
OLUF01002466
[OLUF] human gut metagenome; faeces
253
328
+
Asn
GTT
[ENA]
¢þ
>WENV183308581
OLUF01000426
[OLUF] human gut metagenome; faeces
287
213
-
Arg
TCT
[ENA]
¢þ
>WENV183308601
OLUF01002139
[OLUF] human gut metagenome; faeces
327
410
+
Leu
TAG
[ENA]
¢þ
>WENV183308598
OLUF01001798
[OLUF] human gut metagenome; faeces
328
403
+
Ile
GAT
[ENA]
¢þ
>WENV183308604
OLUF01002466
[OLUF] human gut metagenome; faeces
330
402
+
Glu
TTC
[ENA]
¢þ
>WENV183308608
OLUF01003079
[OLUF] human gut metagenome; faeces
361
443
+
Tyr
GTA
[ENA]
¢þ
>WENV183308580
OLUF01000426
[OLUF] human gut metagenome; faeces
379
309
-
Gly
TCC
[ENA]
¢þ
>WENV183308607
OLUF01002888
[OLUF] human gut metagenome; faeces
401
325
-
Ile
GAT
[ENA]
¢þ
>WENV183308599
OLUF01001798
[OLUF] human gut metagenome; faeces
405
494
+
Ser
GCT
[ENA]
¢þ
>WENV183308605
OLUF01002466
[OLUF] human gut metagenome; faeces
407
478
+
Cys
GCA
[ENA]
¢þ
>WENV183308609
OLUF01003079
[OLUF] human gut metagenome; faeces
452
525
+
Gln
TTG
[ENA]
¢þ
>WENV183308610
OLUF01003227
[OLUF] human gut metagenome; faeces
500
413
-
Leu
TAA
[ENA]
¢þ
>WENV183308584
OLUF01000719
[OLUF] human gut metagenome; faeces
516
588
+
Val
TAC
[ENA]
¢þ
>WENV183308606
OLUF01002466
[OLUF] human gut metagenome; faeces
532
607
+
fMet
CAT
[ENA]
¢þ
>WENV183308579
OLUF01000426
[OLUF] human gut metagenome; faeces
538
463
-
Arg
ACG
[ENA]
¢þ
>WENV183308585
OLUF01000719
[OLUF] human gut metagenome; faeces
591
663
+
Asp
GTC
[ENA]
¢þ
>WENV183308594
OLUF01001656
[OLUF] human gut metagenome; faeces
592
665
+
Gln
CTG
[ENA]
¢þ
>WENV183308578
OLUF01000426
[OLUF] human gut metagenome; faeces
633
546
-
Leu
TAA
[ENA]
¢þ
>WENV183308593
OLUF01001452
[OLUF] human gut metagenome; faeces
637
709
+
Glu
CTC
[ENA]
¢þ
>WENV183308596
OLUF01001763
[OLUF] human gut metagenome; faeces
643
726
+
Leu
CAA
[ENA]
¢þ
>WENV183308586
OLUF01000719
[OLUF] human gut metagenome; faeces
682
754
+
Lys
TTT
[ENA]
¢þ
>WENV183308577
OLUF01000426
[OLUF] human gut metagenome; faeces
716
645
-
Gly
GCC
[ENA]
¢þ
>WENV183308592
OLUF01001439
[OLUF] human gut metagenome; faeces
743
669
-
Ala
TGC
[ENA]
¢þ
>WENV183308587
OLUF01000719
[OLUF] human gut metagenome; faeces
759
842
+
Leu
TAG
[ENA]
¢þ
>WENV183308588
OLUF01000719
[OLUF] human gut metagenome; faeces
854
926
+
Thr
TGT
[ENA]
¢þ
>WENV183308589
OLUF01000719
[OLUF] human gut metagenome; faeces
933
1006
+
Glu
TTC
[ENA]
¢þ
>WENV183308576
OLUF01000426
[OLUF] human gut metagenome; faeces
964
892
-
Thr
TGT
[ENA]
¢þ
>WENV183308591
OLUF01000749
[OLUF] human gut metagenome; faeces
967
1041
+
Thr
CGT
[ENA]
¢þ
>WENV183308590
OLUF01000719
[OLUF] human gut metagenome; faeces
1013
1088
+
Asn
GTT
[ENA]
¢þ
>WENV183308558
OLUF01000064
[OLUF] human gut metagenome; faeces
1049
1119
+
Gly
TCC
[ENA]
¢þ
>WENV183308575
OLUF01000426
[OLUF] human gut metagenome; faeces
1084
1013
-
Glu
TTC
[ENA]
¢þ
>WENV183308559
OLUF01000064
[OLUF] human gut metagenome; faeces
1123
1196
+
Gly
GCC
[ENA]
¢þ
>WENV183308572
OLUF01000251
[OLUF] human gut metagenome; faeces
1129
1047
-
Leu
TAG
[ENA]
¢þ
>WENV183308569
OLUF01000231
[OLUF] human gut metagenome; faeces
1165
1090
-
Pro
TGG
[ENA]
¢þ
>WENV183308574
OLUF01000426
[OLUF] human gut metagenome; faeces
1202
1128
-
Asn
GTT
[ENA]
¢þ
>WENV183308568
OLUF01000231
[OLUF] human gut metagenome; faeces
1244
1171
-
Arg
ACG
[ENA]
¢þ
>WENV183308571
OLUF01000251
[OLUF] human gut metagenome; faeces
1307
1233
-
Lys
TTT
[ENA]
¢þ
>WENV183308567
OLUF01000231
[OLUF] human gut metagenome; faeces
1345
1258
-
Leu
TAA
[ENA]
¢þ
>WENV183308573
OLUF01000346
[OLUF] human gut metagenome; faeces
1358
1444
+
Leu
AAG
[ENA]
¢þ
>WENV183308570
OLUF01000251
[OLUF] human gut metagenome; faeces
1410
1336
-
Phe
GAA
[ENA]
¢þ
>WENV183308566
OLUF01000231
[OLUF] human gut metagenome; faeces
1423
1349
-
Val
TAC
[ENA]
¢þ
>WENV183308560
OLUF01000190
[OLUF] human gut metagenome; faeces
1485
1410
-
Arg
CCT
[ENA]
¢þ
>WENV183308565
OLUF01000231
[OLUF] human gut metagenome; faeces
1503
1429
-
Met
CAT
[ENA]
¢þ
>WENV183308564
OLUF01000231
[OLUF] human gut metagenome; faeces
1592
1518
-
Val
TAC
[ENA]
¢þ
>WENV183308563
OLUF01000231
[OLUF] human gut metagenome; faeces
1701
1626
-
Asp
GTC
[ENA]
¢þ
>WENV183308561
OLUF01000216
[OLUF] human gut metagenome; faeces
1708
1793
+
Leu
CAG
[ENA]
¢þ
>WENV183308562
OLUF01000231
[OLUF] human gut metagenome; faeces
1792
1718
-
Ile2
CAT
[ENA]
¢þ
>WENV183308557
OLUF01000024
[OLUF] human gut metagenome; faeces
3479
3405
-
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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