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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLUG] human gut metagenome; faeces
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183308653
OLUG01004097
[OLUG] human gut metagenome; faeces
87
161
+
Pro
TGG
[ENA]
¢þ
>WENV183308658
OLUG01004549
[OLUG] human gut metagenome; faeces
119
192
+
Ile
GAT
[ENA]
¢þ
>WENV183308662
OLUG01005548
[OLUG] human gut metagenome; faeces
129
204
+
Asn
GTT
[ENA]
¢þ
>WENV183308636
OLUG01002636
[OLUG] human gut metagenome; faeces
142
224
+
Tyr
GTA
[ENA]
¢þ
>WENV183308642
OLUG01002665
[OLUG] human gut metagenome; faeces
158
84
-
Trp
CCA
[ENA]
¢þ
>WENV183308654
OLUG01004097
[OLUG] human gut metagenome; faeces
169
239
+
Gly
TCC
[ENA]
¢þ
>WENV183308648
OLUG01003324
[OLUG] human gut metagenome; faeces
188
113
-
Gly
GCC
[ENA]
¢þ
>WENV183308659
OLUG01004549
[OLUG] human gut metagenome; faeces
200
273
+
Ala
TGC
[ENA]
¢þ
>WENV183308656
OLUG01004485
[OLUG] human gut metagenome; faeces
206
281
+
Thr
TGT
[ENA]
¢þ
>WENV183308645
OLUG01002999
[OLUG] human gut metagenome; faeces
230
304
+
Asn
GTT
[ENA]
¢þ
>WENV183308664
OLUG01005762
[OLUG] human gut metagenome; faeces
239
167
-
Thr
CGT
[ENA]
¢þ
>WENV183308637
OLUG01002636
[OLUG] human gut metagenome; faeces
240
314
+
Thr
TGT
[ENA]
¢þ
>WENV183308625
OLUG01000643
[OLUG] human gut metagenome; faeces
242
159
-
Tyr
GTA
[ENA]
¢þ
>WENV183308655
OLUG01004097
[OLUG] human gut metagenome; faeces
243
316
+
Gly
GCC
[ENA]
¢þ
>WENV183308652
OLUG01004038
[OLUG] human gut metagenome; faeces
262
187
-
Phe
GAA
[ENA]
¢þ
>WENV183308650
OLUG01003500
[OLUG] human gut metagenome; faeces
278
353
+
Arg
TCT
[ENA]
¢þ
>WENV183308657
OLUG01004485
[OLUG] human gut metagenome; faeces
290
374
+
Tyr
GTA
[ENA]
¢þ
>WENV183308638
OLUG01002636
[OLUG] human gut metagenome; faeces
317
392
+
Ile2
CAT
[ENA]
¢þ
>WENV183308643
OLUG01002739
[OLUG] human gut metagenome; faeces
331
404
+
Gly
CCC
[ENA]
¢þ
>WENV183308660
OLUG01004793
[OLUG] human gut metagenome; faeces
347
423
+
Arg
CCG
[ENA]
¢þ
>WENV183308635
OLUG01002226
[OLUG] human gut metagenome; faeces
354
283
-
Gln
CTG
[ENA]
¢þ
>WENV183308646
OLUG01002999
[OLUG] human gut metagenome; faeces
357
430
+
Glu
TTC
[ENA]
¢þ
>WENV183308651
OLUG01003500
[OLUG] human gut metagenome; faeces
360
434
+
His
GTG
[ENA]
¢þ
>WENV183308663
OLUG01005762
[OLUG] human gut metagenome; faeces
378
307
-
Glu
CTC
[ENA]
¢þ
>WENV183308632
OLUG01001395
[OLUG] human gut metagenome; faeces
406
480
+
Asn
GTT
[ENA]
¢þ
>WENV183308639
OLUG01002636
[OLUG] human gut metagenome; faeces
406
481
+
Asp
GTC
[ENA]
¢þ
>WENV183308634
OLUG01001822
[OLUG] human gut metagenome; faeces
436
509
+
Lys
TTT
[ENA]
¢þ
>WENV183308647
OLUG01002999
[OLUG] human gut metagenome; faeces
472
544
+
Cys
GCA
[ENA]
¢þ
>WENV183308621
OLUG01000168
[OLUG] human gut metagenome; faeces
474
547
+
Gly
GCC
[ENA]
¢þ
>WENV183308661
OLUG01005045
[OLUG] human gut metagenome; faeces
478
393
-
Leu
TAA
[ENA]
¢þ
>WENV183308615
OLUG01000011
[OLUG] human gut metagenome; faeces
505
423
-
Leu
TAG
[ENA]
¢þ
>WENV183308640
OLUG01002636
[OLUG] human gut metagenome; faeces
517
590
+
Val
TAC
[ENA]
¢þ
>WENV183308644
OLUG01002925
[OLUG] human gut metagenome; faeces
524
439
-
Leu
CAG
[ENA]
¢þ
>WENV183308649
OLUG01003452
[OLUG] human gut metagenome; faeces
529
616
+
Ser
GCT
[ENA]
¢þ
>WENV183308641
OLUG01002636
[OLUG] human gut metagenome; faeces
610
684
+
Met
CAT
[ENA]
¢þ
>WENV183308617
OLUG01000024
[OLUG] human gut metagenome; faeces
615
544
-
Gly
GCC
[ENA]
¢þ
>WENV183308631
OLUG01001246
[OLUG] human gut metagenome; faeces
632
544
-
Ser
GGA
[ENA]
¢þ
>WENV183308624
OLUG01000541
[OLUG] human gut metagenome; faeces
657
729
+
Cys
GCA
[ENA]
¢þ
>WENV183308630
OLUG01001169
[OLUG] human gut metagenome; faeces
788
869
+
Leu
TAG
[ENA]
¢þ
>WENV183308633
OLUG01001781
[OLUG] human gut metagenome; faeces
927
854
-
Phe
GAA
[ENA]
¢þ
>WENV183308626
OLUG01000764
[OLUG] human gut metagenome; faeces
977
1050
+
Lys
CTT
[ENA]
¢þ
>WENV183308629
OLUG01001072
[OLUG] human gut metagenome; faeces
1152
1225
+
fMet
CAT
[ENA]
¢þ
>WENV183308622
OLUG01000302
[OLUG] human gut metagenome; faeces
1211
1286
+
Thr
GGT
[ENA]
¢þ
>WENV183308623
OLUG01000440
[OLUG] human gut metagenome; faeces
1246
1319
+
Trp
CCA
[ENA]
¢þ
>WENV183308627
OLUG01000812
[OLUG] human gut metagenome; faeces
1290
1216
-
Asp
GTC
[ENA]
¢þ
>WENV183308628
OLUG01000898
[OLUG] human gut metagenome; faeces
1297
1371
+
Thr
TGT
[ENA]
¢þ
>WENV183308618
OLUG01000055
[OLUG] human gut metagenome; faeces
2099
2175
+
Ile
GAT
[ENA]
¢þ
>WENV183308619
OLUG01000055
[OLUG] human gut metagenome; faeces
2218
2293
+
Ala
TGC
[ENA]
¢þ
>WENV183308620
OLUG01000129
[OLUG] human gut metagenome; faeces
3365
3436
+
Gln
CTG
[ENA]
¢þ
>WENV183308613
OLUG01000007
[OLUG] human gut metagenome; faeces
3714
3788
+
Ile
GAT
[ENA]
¢þ
>WENV183308614
OLUG01000007
[OLUG] human gut metagenome; faeces
3890
3964
+
Ala
TGC
[ENA]
¢þ
>WENV183308616
OLUG01000024
[OLUG] human gut metagenome; faeces
3921
3847
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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