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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLUH] human gut metagenome; faeces
HIT:
69 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183308671
OLUH01000122
[OLUH] human gut metagenome; faeces
42
114
+
Val
GAC
[ENA]
¢þ
>WENV183308732
OLUH01005522
[OLUH] human gut metagenome; faeces
71
152
+
Leu
TAG
[ENA]
¢þ
>WENV183308720
OLUH01003015
[OLUH] human gut metagenome; faeces
97
168
+
Trp
CCA
[ENA]
¢þ
>WENV183308728
OLUH01004652
[OLUH] human gut metagenome; faeces
109
37
-
Val
TAC
[ENA]
¢þ
>WENV183308673
OLUH01000136
[OLUH] human gut metagenome; faeces
126
51
-
Arg
CCT
[ENA]
¢þ
>WENV183308733
OLUH01005553
[OLUH] human gut metagenome; faeces
129
55
-
Pro
GGG
[ENA]
¢þ
>WENV183308725
OLUH01003370
[OLUH] human gut metagenome; faeces
144
71
-
Gly
GCC
[ENA]
¢þ
>WENV183308672
OLUH01000122
[OLUH] human gut metagenome; faeces
162
236
+
Val
CAC
[ENA]
¢þ
>WENV183308731
OLUH01005324
[OLUH] human gut metagenome; faeces
174
103
-
Thr
GGT
[ENA]
¢þ
>WENV183308715
OLUH01002797
[OLUH] human gut metagenome; faeces
175
102
-
Glu
TTC
[ENA]
¢þ
>WENV183308709
OLUH01001948
[OLUH] human gut metagenome; faeces
217
146
-
Cys
GCA
[ENA]
¢þ
>WENV183308724
OLUH01003370
[OLUH] human gut metagenome; faeces
218
148
-
Gly
TCC
[ENA]
¢þ
>WENV183308666
OLUH01000002
[OLUH] human gut metagenome; faeces
221
131
-
Ser
GGA
[ENA]
¢þ
>WENV183308722
OLUH01003244
[OLUH] human gut metagenome; faeces
241
314
+
Ala
TGC
[ENA]
¢þ
>WENV183308716
OLUH01002801
[OLUH] human gut metagenome; faeces
245
157
-
Leu
GAG
[ENA]
¢þ
>WENV183308669
OLUH01000063
[OLUH] human gut metagenome; faeces
251
162
-
Ser
GCT
[ENA]
¢þ
>WENV183308729
OLUH01004724
[OLUH] human gut metagenome; faeces
256
331
+
Trp
CCA
[ENA]
¢þ
>WENV183308712
OLUH01002135
[OLUH] human gut metagenome; faeces
264
337
+
Pro
GGG
[ENA]
¢þ
>WENV183308692
OLUH01001277
[OLUH] human gut metagenome; faeces
264
338
+
Asn
GTT
[ENA]
¢þ
>WENV183308675
OLUH01000447
[OLUH] human gut metagenome; faeces
279
354
+
Pro
TGG
[ENA]
¢þ
>WENV183308704
OLUH01001826
[OLUH] human gut metagenome; faeces
284
209
-
Arg
CCG
[ENA]
¢þ
>WENV183308708
OLUH01001948
[OLUH] human gut metagenome; faeces
295
224
-
Gln
TTG
[ENA]
¢þ
>WENV183308713
OLUH01002421
[OLUH] human gut metagenome; faeces
306
382
+
Leu
AAG
[ENA]
¢þ
>WENV183308718
OLUH01002883
[OLUH] human gut metagenome; faeces
309
235
-
Met
CAT
[ENA]
¢þ
>WENV183308723
OLUH01003244
[OLUH] human gut metagenome; faeces
336
411
+
Ile
GAT
[ENA]
¢þ
>WENV183308726
OLUH01003666
[OLUH] human gut metagenome; faeces
339
265
-
Ile2
CAT
[ENA]
¢þ
>WENV183308711
OLUH01002051
[OLUH] human gut metagenome; faeces
381
307
-
Thr
CGT
[ENA]
¢þ
>WENV183308693
OLUH01001277
[OLUH] human gut metagenome; faeces
382
453
+
Glu
TTC
[ENA]
¢þ
>WENV183308676
OLUH01000447
[OLUH] human gut metagenome; faeces
389
459
+
Gly
TCC
[ENA]
¢þ
>WENV183308688
OLUH01001113
[OLUH] human gut metagenome; faeces
391
318
-
Ala
TGC
[ENA]
¢þ
>WENV183308727
OLUH01003801
[OLUH] human gut metagenome; faeces
423
351
-
Glu
CTC
[ENA]
¢þ
>WENV183308730
OLUH01004917
[OLUH] human gut metagenome; faeces
427
501
+
Pro
TGG
[ENA]
¢þ
>WENV183308719
OLUH01002973
[OLUH] human gut metagenome; faeces
430
358
-
Phe
GAA
[ENA]
¢þ
>WENV183308721
OLUH01003243
[OLUH] human gut metagenome; faeces
436
363
-
Lys
TTT
[ENA]
¢þ
>WENV183308665
OLUH01000002
[OLUH] human gut metagenome; faeces
467
381
-
Ser
TGA
[ENA]
¢þ
>WENV183308717
OLUH01002883
[OLUH] human gut metagenome; faeces
468
386
-
Tyr
GTA
[ENA]
¢þ
>WENV183308691
OLUH01001201
[OLUH] human gut metagenome; faeces
470
545
+
His
GTG
[ENA]
¢þ
>WENV183308677
OLUH01000447
[OLUH] human gut metagenome; faeces
481
555
+
Arg
TCT
[ENA]
¢þ
>WENV183308707
OLUH01001948
[OLUH] human gut metagenome; faeces
500
414
-
Ser
GCT
[ENA]
¢þ
>WENV183308694
OLUH01001277
[OLUH] human gut metagenome; faeces
502
574
+
Thr
TGT
[ENA]
¢þ
>WENV183308674
OLUH01000288
[OLUH] human gut metagenome; faeces
537
611
+
Ala
TGC
[ENA]
¢þ
>WENV183308678
OLUH01000447
[OLUH] human gut metagenome; faeces
560
634
+
His
GTG
[ENA]
¢þ
>WENV183308695
OLUH01001277
[OLUH] human gut metagenome; faeces
590
663
+
fMet
CAT
[ENA]
¢þ
>WENV183308710
OLUH01001978
[OLUH] human gut metagenome; faeces
635
711
+
fMet
CAT
[ENA]
¢þ
>WENV183308703
OLUH01001766
[OLUH] human gut metagenome; faeces
640
567
-
Arg
CCT
[ENA]
¢þ
>WENV183308679
OLUH01000447
[OLUH] human gut metagenome; faeces
643
718
+
Gln
TTG
[ENA]
¢þ
>WENV183308696
OLUH01001277
[OLUH] human gut metagenome; faeces
667
741
+
Phe
GAA
[ENA]
¢þ
>WENV183308682
OLUH01000588
[OLUH] human gut metagenome; faeces
672
758
+
Leu
AAG
[ENA]
¢þ
>WENV183308680
OLUH01000447
[OLUH] human gut metagenome; faeces
727
800
+
Lys
TTT
[ENA]
¢þ
>WENV183308683
OLUH01000671
[OLUH] human gut metagenome; faeces
728
641
-
Ser
GCT
[ENA]
¢þ
>WENV183308689
OLUH01001131
[OLUH] human gut metagenome; faeces
747
828
+
Tyr
GTA
[ENA]
¢þ
>WENV183308697
OLUH01001277
[OLUH] human gut metagenome; faeces
770
844
+
Lys
TTT
[ENA]
¢þ
>WENV183308714
OLUH01002555
[OLUH] human gut metagenome; faeces
778
702
-
Asp
GTC
[ENA]
¢þ
>WENV183308706
OLUH01001934
[OLUH] human gut metagenome; faeces
821
894
+
Gly
TCC
[ENA]
¢þ
>WENV183308698
OLUH01001277
[OLUH] human gut metagenome; faeces
940
1022
+
Leu
TAG
[ENA]
¢þ
>WENV183308687
OLUH01000933
[OLUH] human gut metagenome; faeces
969
1044
+
Gly
GCC
[ENA]
¢þ
>WENV183308705
OLUH01001910
[OLUH] human gut metagenome; faeces
1005
1094
+
Ser
CGA
[ENA]
¢þ
>WENV183308702
OLUH01001396
[OLUH] human gut metagenome; faeces
1031
957
-
Met
CAT
[ENA]
¢þ
>WENV183308690
OLUH01001164
[OLUH] human gut metagenome; faeces
1054
969
-
Leu
CAG
[ENA]
¢þ
>WENV183308701
OLUH01001396
[OLUH] human gut metagenome; faeces
1120
1046
-
Val
TAC
[ENA]
¢þ
>WENV183308700
OLUH01001396
[OLUH] human gut metagenome; faeces
1231
1156
-
Asp
GTC
[ENA]
¢þ
>WENV183308699
OLUH01001296
[OLUH] human gut metagenome; faeces
1273
1347
+
Arg
ACG
[ENA]
¢þ
>WENV183308685
OLUH01000860
[OLUH] human gut metagenome; faeces
1381
1453
+
Arg
CCG
[ENA]
¢þ
>WENV183308684
OLUH01000780
[OLUH] human gut metagenome; faeces
1439
1365
-
Arg
TCT
[ENA]
¢þ
>WENV183308686
OLUH01000891
[OLUH] human gut metagenome; faeces
1573
1486
-
Leu
TAA
[ENA]
¢þ
>WENV183308681
OLUH01000524
[OLUH] human gut metagenome; faeces
1777
1704
-
Lys
CTT
[ENA]
¢þ
>WENV183308670
OLUH01000077
[OLUH] human gut metagenome; faeces
4030
4104
+
Lys
CTT
[ENA]
¢þ
>WENV183308668
OLUH01000043
[OLUH] human gut metagenome; faeces
4777
4849
+
Gln
CTG
[ENA]
¢þ
>WENV183308667
OLUH01000022
[OLUH] human gut metagenome; faeces
5730
5804
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK