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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLUI] human gut metagenome; faeces
HIT:
67 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183308743
OLUI01000023
[OLUI] human gut metagenome; faeces
82
1
-
Leu
TAG
[ENA]
¢þ
>WENV183308800
OLUI01003714
[OLUI] human gut metagenome; faeces
110
183
+
Arg
CCT
[ENA]
¢þ
>WENV183308773
OLUI01000986
[OLUI] human gut metagenome; faeces
133
58
-
Asn
GTT
[ENA]
¢þ
>WENV183308797
OLUI01003207
[OLUI] human gut metagenome; faeces
147
74
-
Lys
CTT
[ENA]
¢þ
>WENV183308757
OLUI01000205
[OLUI] human gut metagenome; faeces
161
88
-
Val
CAC
[ENA]
¢þ
>WENV183308760
OLUI01000306
[OLUI] human gut metagenome; faeces
167
81
-
Ser
CGA
[ENA]
¢þ
>WENV183308793
OLUI01002578
[OLUI] human gut metagenome; faeces
168
239
+
Gln
TTG
[ENA]
¢þ
>WENV183308799
OLUI01003549
[OLUI] human gut metagenome; faeces
171
99
-
Arg
CCG
[ENA]
¢þ
>WENV183308783
OLUI01001155
[OLUI] human gut metagenome; faeces
189
115
-
Val
TAC
[ENA]
¢þ
>WENV183308769
OLUI01000745
[OLUI] human gut metagenome; faeces
192
267
+
Arg
CCT
[ENA]
¢þ
>WENV183308791
OLUI01002211
[OLUI] human gut metagenome; faeces
214
132
-
Tyr
GTA
[ENA]
¢þ
>WENV183308742
OLUI01000023
[OLUI] human gut metagenome; faeces
225
150
-
Thr
CGT
[ENA]
¢þ
>WENV183308770
OLUI01000779
[OLUI] human gut metagenome; faeces
249
175
-
Lys
CTT
[ENA]
¢þ
>WENV183308782
OLUI01001155
[OLUI] human gut metagenome; faeces
269
194
-
Asp
GTC
[ENA]
¢þ
>WENV183308756
OLUI01000205
[OLUI] human gut metagenome; faeces
278
206
-
Val
GAC
[ENA]
¢þ
>WENV183308794
OLUI01003111
[OLUI] human gut metagenome; faeces
285
372
+
Ser
TGA
[ENA]
¢þ
>WENV183308796
OLUI01003202
[OLUI] human gut metagenome; faeces
347
273
-
Pro
GGG
[ENA]
¢þ
>WENV183308786
OLUI01001445
[OLUI] human gut metagenome; faeces
349
267
-
Leu
TAA
[ENA]
¢þ
>WENV183308781
OLUI01001155
[OLUI] human gut metagenome; faeces
358
283
-
Ile2
CAT
[ENA]
¢þ
>WENV183308776
OLUI01001137
[OLUI] human gut metagenome; faeces
370
443
+
Ala
TGC
[ENA]
¢þ
>WENV183308795
OLUI01003111
[OLUI] human gut metagenome; faeces
407
498
+
Ser
GGA
[ENA]
¢þ
>WENV183308798
OLUI01003387
[OLUI] human gut metagenome; faeces
423
335
-
Ser
GCT
[ENA]
¢þ
>WENV183308780
OLUI01001155
[OLUI] human gut metagenome; faeces
434
362
-
Thr
TGT
[ENA]
¢þ
>WENV183308777
OLUI01001137
[OLUI] human gut metagenome; faeces
465
540
+
Ile
GAT
[ENA]
¢þ
>WENV183308779
OLUI01001155
[OLUI] human gut metagenome; faeces
554
483
-
Glu
TTC
[ENA]
¢þ
>WENV183308766
OLUI01000511
[OLUI] human gut metagenome; faeces
593
519
-
Arg
TCT
[ENA]
¢þ
>WENV183308784
OLUI01001184
[OLUI] human gut metagenome; faeces
628
554
-
Thr
TGT
[ENA]
¢þ
>WENV183308789
OLUI01001865
[OLUI] human gut metagenome; faeces
644
717
+
Gly
GCC
[ENA]
¢þ
>WENV183308778
OLUI01001155
[OLUI] human gut metagenome; faeces
672
598
-
Asn
GTT
[ENA]
¢þ
>WENV183308792
OLUI01002322
[OLUI] human gut metagenome; faeces
698
609
-
Ser
GCT
[ENA]
¢þ
>WENV183308790
OLUI01001865
[OLUI] human gut metagenome; faeces
747
818
+
Cys
GCA
[ENA]
¢þ
>WENV183308775
OLUI01001114
[OLUI] human gut metagenome; faeces
813
886
+
Gly
TCC
[ENA]
¢þ
>WENV183308755
OLUI01000203
[OLUI] human gut metagenome; faeces
827
746
-
Leu
TAA
[ENA]
¢þ
>WENV183308787
OLUI01001659
[OLUI] human gut metagenome; faeces
867
792
-
Arg
CCG
[ENA]
¢þ
>WENV183308768
OLUI01000664
[OLUI] human gut metagenome; faeces
904
828
-
Leu
CAA
[ENA]
¢þ
>WENV183308788
OLUI01001743
[OLUI] human gut metagenome; faeces
913
838
-
Asn
GTT
[ENA]
¢þ
>WENV183308774
OLUI01001031
[OLUI] human gut metagenome; faeces
957
884
-
Thr
CGT
[ENA]
¢þ
>WENV183308785
OLUI01001408
[OLUI] human gut metagenome; faeces
1058
977
-
Leu
TAG
[ENA]
¢þ
>WENV183308771
OLUI01000975
[OLUI] human gut metagenome; faeces
1245
1335
+
Leu
GAG
[ENA]
¢þ
>WENV183308772
OLUI01000978
[OLUI] human gut metagenome; faeces
1358
1283
-
Arg
CCG
[ENA]
¢þ
>WENV183308762
OLUI01000326
[OLUI] human gut metagenome; faeces
1390
1463
+
Gly
CCC
[ENA]
¢þ
>WENV183308764
OLUI01000383
[OLUI] human gut metagenome; faeces
1476
1386
-
Leu
GAG
[ENA]
¢þ
>WENV183308767
OLUI01000604
[OLUI] human gut metagenome; faeces
1491
1406
-
Ser
GGA
[ENA]
¢þ
>WENV183308752
OLUI01000119
[OLUI] human gut metagenome; faeces
1508
1582
+
Arg
ACG
[ENA]
¢þ
>WENV183308758
OLUI01000247
[OLUI] human gut metagenome; faeces
1516
1589
+
Lys
TTT
[ENA]
¢þ
>WENV183308741
OLUI01000017
[OLUI] human gut metagenome; faeces
1607
1533
-
Val
TAC
[ENA]
¢þ
>WENV183308761
OLUI01000324
[OLUI] human gut metagenome; faeces
2032
1957
-
Pro
TGG
[ENA]
¢þ
>WENV183308765
OLUI01000408
[OLUI] human gut metagenome; faeces
2058
2132
+
Ile2
CAT
[ENA]
¢þ
>WENV183308754
OLUI01000171
[OLUI] human gut metagenome; faeces
2348
2424
+
Arg
TCT
[ENA]
¢þ
>WENV183308763
OLUI01000332
[OLUI] human gut metagenome; faeces
2523
2595
+
Glu
TTC
[ENA]
¢þ
>WENV183308745
OLUI01000056
[OLUI] human gut metagenome; faeces
2976
3062
+
Ser
CGA
[ENA]
¢þ
>WENV183308759
OLUI01000278
[OLUI] human gut metagenome; faeces
2985
2910
-
Leu
CAA
[ENA]
¢þ
>WENV183308753
OLUI01000137
[OLUI] human gut metagenome; faeces
4106
4024
-
Tyr
GTA
[ENA]
¢þ
>WENV183308751
OLUI01000108
[OLUI] human gut metagenome; faeces
5011
5085
+
His
GTG
[ENA]
¢þ
>WENV183308748
OLUI01000076
[OLUI] human gut metagenome; faeces
5160
5233
+
Arg
CCT
[ENA]
¢þ
>WENV183308749
OLUI01000107
[OLUI] human gut metagenome; faeces
5383
5457
+
Ile
GAT
[ENA]
¢þ
>WENV183308750
OLUI01000107
[OLUI] human gut metagenome; faeces
5496
5569
+
Ala
TGC
[ENA]
¢þ
>WENV183308747
OLUI01000060
[OLUI] human gut metagenome; faeces
6456
6542
+
Ser
TGA
[ENA]
¢þ
>WENV183308735
OLUI01000005
[OLUI] human gut metagenome; faeces
7111
7187
+
fMet
CAT
[ENA]
¢þ
>WENV183308744
OLUI01000051
[OLUI] human gut metagenome; faeces
7775
7850
+
Val
CAC
[ENA]
¢þ
>WENV183308746
OLUI01000058
[OLUI] human gut metagenome; faeces
7999
8088
+
Ser
GCT
[ENA]
¢þ
>WENV183308740
OLUI01000012
[OLUI] human gut metagenome; faeces
15646
15573
-
Ala
GGC
[ENA]
¢þ
>WENV183308734
OLUI01000004
[OLUI] human gut metagenome; faeces
16968
16894
-
Thr
TGT
[ENA]
¢þ
>WENV183308739
OLUI01000010
[OLUI] human gut metagenome; faeces
18304
18230
-
Pro
CGG
[ENA]
¢þ
>WENV183308738
OLUI01000008
[OLUI] human gut metagenome; faeces
20944
20870
-
Gln
CTG
[ENA]
¢þ
>WENV183308737
OLUI01000008
[OLUI] human gut metagenome; faeces
21055
20982
-
Glu
CTC
[ENA]
¢þ
>WENV183308736
OLUI01000007
[OLUI] human gut metagenome; faeces
21759
21674
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK