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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OLUK] human gut metagenome; faeces
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183308864
OLUK01002487
[OLUK] human gut metagenome; faeces
20
95
+
Ala
CGC
[ENA]
¢þ
>WENV183308858
OLUK01001697
[OLUK] human gut metagenome; faeces
65
140
+
Lys
CTT
[ENA]
¢þ
>WENV183308862
OLUK01002426
[OLUK] human gut metagenome; faeces
125
201
+
Asn
GTT
[ENA]
¢þ
>WENV183308856
OLUK01001453
[OLUK] human gut metagenome; faeces
150
231
+
Leu
TAG
[ENA]
¢þ
>WENV183308841
OLUK01000226
[OLUK] human gut metagenome; faeces
168
94
-
Ile2
CAT
[ENA]
¢þ
>WENV183308860
OLUK01001946
[OLUK] human gut metagenome; faeces
176
94
-
Leu
CAG
[ENA]
¢þ
>WENV183308861
OLUK01001989
[OLUK] human gut metagenome; faeces
203
115
-
Ser
GCT
[ENA]
¢þ
>WENV183308855
OLUK01001287
[OLUK] human gut metagenome; faeces
235
150
-
Leu
CAG
[ENA]
¢þ
>WENV183308840
OLUK01000226
[OLUK] human gut metagenome; faeces
245
172
-
Thr
TGT
[ENA]
¢þ
>WENV183308851
OLUK01001190
[OLUK] human gut metagenome; faeces
249
323
+
Glu
TTC
[ENA]
¢þ
>WENV183308857
OLUK01001687
[OLUK] human gut metagenome; faeces
256
332
+
Arg
CCG
[ENA]
¢þ
>WENV183308859
OLUK01001946
[OLUK] human gut metagenome; faeces
274
201
-
Gly
GCC
[ENA]
¢þ
>WENV183308848
OLUK01000473
[OLUK] human gut metagenome; faeces
283
356
+
Ala
TGC
[ENA]
¢þ
>WENV183308846
OLUK01000308
[OLUK] human gut metagenome; faeces
323
398
+
Ile2
CAT
[ENA]
¢þ
>WENV183308852
OLUK01001190
[OLUK] human gut metagenome; faeces
328
411
+
Ser
TGA
[ENA]
¢þ
>WENV183308839
OLUK01000226
[OLUK] human gut metagenome; faeces
344
273
-
Glu
TTC
[ENA]
¢þ
>WENV183308835
OLUK01000194
[OLUK] human gut metagenome; faeces
344
419
+
Phe
GAA
[ENA]
¢þ
>WENV183308845
OLUK01000258
[OLUK] human gut metagenome; faeces
380
307
-
fMet
CAT
[ENA]
¢þ
>WENV183308863
OLUK01002477
[OLUK] human gut metagenome; faeces
381
453
+
Gln
CTG
[ENA]
¢þ
>WENV183308854
OLUK01001234
[OLUK] human gut metagenome; faeces
382
306
-
Val
CAC
[ENA]
¢þ
>WENV183308853
OLUK01001190
[OLUK] human gut metagenome; faeces
426
501
+
Phe
GAA
[ENA]
¢þ
>WENV183308850
OLUK01000917
[OLUK] human gut metagenome; faeces
478
406
-
Lys
CTT
[ENA]
¢þ
>WENV183308838
OLUK01000226
[OLUK] human gut metagenome; faeces
499
427
-
Asn
GTT
[ENA]
¢þ
>WENV183308844
OLUK01000258
[OLUK] human gut metagenome; faeces
514
433
-
Tyr
GTA
[ENA]
¢þ
>WENV183308836
OLUK01000194
[OLUK] human gut metagenome; faeces
562
637
+
Gly
GCC
[ENA]
¢þ
>WENV183308843
OLUK01000258
[OLUK] human gut metagenome; faeces
609
535
-
Val
TAC
[ENA]
¢þ
>WENV183308837
OLUK01000194
[OLUK] human gut metagenome; faeces
667
741
+
Cys
GCA
[ENA]
¢þ
>WENV183308842
OLUK01000258
[OLUK] human gut metagenome; faeces
714
639
-
Asp
GTC
[ENA]
¢þ
>WENV183308849
OLUK01000491
[OLUK] human gut metagenome; faeces
718
789
+
Gln
TTG
[ENA]
¢þ
>WENV183308847
OLUK01000359
[OLUK] human gut metagenome; faeces
749
821
+
Pro
TGG
[ENA]
¢þ
>WENV183308833
OLUK01000003
[OLUK] human gut metagenome; faeces
1936
2012
+
Ile
GAT
[ENA]
¢þ
>WENV183308834
OLUK01000003
[OLUK] human gut metagenome; faeces
2041
2115
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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