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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLUM] human gut metagenome; faeces
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183308952
OLUM01001776
[OLUM] human gut metagenome; faeces
83
153
+
Gly
TCC
[ENA]
¢þ
>WENV183308937
OLUM01000530
[OLUM] human gut metagenome; faeces
106
22
-
Tyr
GTA
[ENA]
¢þ
>WENV183308933
OLUM01000274
[OLUM] human gut metagenome; faeces
113
40
-
Glu
TTC
[ENA]
¢þ
>WENV183308934
OLUM01000276
[OLUM] human gut metagenome; faeces
121
46
-
Phe
GAA
[ENA]
¢þ
>WENV183308959
OLUM01001838
[OLUM] human gut metagenome; faeces
137
63
-
Thr
TGT
[ENA]
¢þ
>WENV183308953
OLUM01001776
[OLUM] human gut metagenome; faeces
180
256
+
Arg
TCT
[ENA]
¢þ
>WENV183308936
OLUM01000302
[OLUM] human gut metagenome; faeces
186
99
-
Ser
TGA
[ENA]
¢þ
>WENV183308932
OLUM01000274
[OLUM] human gut metagenome; faeces
190
116
-
Asn
GTT
[ENA]
¢þ
>WENV183308951
OLUM01001429
[OLUM] human gut metagenome; faeces
279
192
-
Ser
GGA
[ENA]
¢þ
>WENV183308958
OLUM01001838
[OLUM] human gut metagenome; faeces
318
245
-
Val
TAC
[ENA]
¢þ
>WENV183308955
OLUM01001816
[OLUM] human gut metagenome; faeces
344
269
-
Thr
GGT
[ENA]
¢þ
>WENV183308946
OLUM01001024
[OLUM] human gut metagenome; faeces
393
318
-
Asn
GTT
[ENA]
¢þ
>WENV183308947
OLUM01001078
[OLUM] human gut metagenome; faeces
409
503
+
SeC
TCA
[ENA]
¢þ
>WENV183308954
OLUM01001816
[OLUM] human gut metagenome; faeces
425
351
-
Gly
TCC
[ENA]
¢þ
>WENV183308957
OLUM01001838
[OLUM] human gut metagenome; faeces
431
356
-
Asp
GTC
[ENA]
¢þ
>WENV183308942
OLUM01000834
[OLUM] human gut metagenome; faeces
484
557
+
Gly
CCC
[ENA]
¢þ
>WENV183308949
OLUM01001352
[OLUM] human gut metagenome; faeces
516
592
+
Val
GAC
[ENA]
¢þ
>WENV183308956
OLUM01001838
[OLUM] human gut metagenome; faeces
521
446
-
Ile2
CAT
[ENA]
¢þ
>WENV183308950
OLUM01001352
[OLUM] human gut metagenome; faeces
597
673
+
Val
GAC
[ENA]
¢þ
>WENV183308948
OLUM01001113
[OLUM] human gut metagenome; faeces
616
540
-
fMet
CAT
[ENA]
¢þ
>WENV183308938
OLUM01000663
[OLUM] human gut metagenome; faeces
796
870
+
Arg
CCT
[ENA]
¢þ
>WENV183308943
OLUM01000854
[OLUM] human gut metagenome; faeces
1004
1079
+
Ala
GGC
[ENA]
¢þ
>WENV183308944
OLUM01000996
[OLUM] human gut metagenome; faeces
1228
1303
+
Thr
TGT
[ENA]
¢þ
>WENV183308945
OLUM01000996
[OLUM] human gut metagenome; faeces
1312
1396
+
Tyr
GTA
[ENA]
¢þ
>WENV183308941
OLUM01000813
[OLUM] human gut metagenome; faeces
1621
1535
-
Leu
TAA
[ENA]
¢þ
>WENV183308940
OLUM01000813
[OLUM] human gut metagenome; faeces
1707
1634
-
Cys
GCA
[ENA]
¢þ
>WENV183308939
OLUM01000803
[OLUM] human gut metagenome; faeces
1712
1787
+
Val
TAC
[ENA]
¢þ
>WENV183308924
OLUM01000075
[OLUM] human gut metagenome; faeces
1806
1882
+
Pro
CGG
[ENA]
¢þ
>WENV183308927
OLUM01000176
[OLUM] human gut metagenome; faeces
2382
2458
+
Pro
GGG
[ENA]
¢þ
>WENV183308928
OLUM01000186
[OLUM] human gut metagenome; faeces
3031
2956
-
Thr
CGT
[ENA]
¢þ
>WENV183308929
OLUM01000223
[OLUM] human gut metagenome; faeces
3358
3434
+
Met
CAT
[ENA]
¢þ
>WENV183308931
OLUM01000274
[OLUM] human gut metagenome; faeces
3430
3355
-
Glu
TTC
[ENA]
¢þ
>WENV183308930
OLUM01000223
[OLUM] human gut metagenome; faeces
3483
3557
+
Gln
CTG
[ENA]
¢þ
>WENV183308935
OLUM01000277
[OLUM] human gut metagenome; faeces
3670
3745
+
Lys
TTT
[ENA]
¢þ
>WENV183308925
OLUM01000167
[OLUM] human gut metagenome; faeces
4533
4609
+
Asp
GTC
[ENA]
¢þ
>WENV183308926
OLUM01000167
[OLUM] human gut metagenome; faeces
4618
4693
+
Trp
CCA
[ENA]
¢þ
>WENV183308923
OLUM01000003
[OLUM] human gut metagenome; faeces
21896
21820
-
Pro
TGG
[ENA]
¢þ
>WENV183308922
OLUM01000003
[OLUM] human gut metagenome; faeces
22025
21939
-
Leu
CAG
[ENA]
¢þ
>WENV183308921
OLUM01000003
[OLUM] human gut metagenome; faeces
22121
22046
-
His
GTG
[ENA]
¢þ
>WENV183308920
OLUM01000003
[OLUM] human gut metagenome; faeces
22256
22180
-
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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