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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLVC] human gut metagenome; faeces
HIT:
65 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183309632
OLVC01000513
[OLVC] human gut metagenome; faeces
30
105
+
Trp
CCA
[ENA]
¢þ
>WENV183309633
OLVC01000528
[OLVC] human gut metagenome; faeces
48
131
+
Leu
TAG
[ENA]
¢þ
>WENV183309639
OLVC01001419
[OLVC] human gut metagenome; faeces
56
131
+
Lys
TTT
[ENA]
¢þ
>WENV183309634
OLVC01000776
[OLVC] human gut metagenome; faeces
100
173
+
Cys
GCA
[ENA]
¢þ
>WENV183309648
OLVC01001766
[OLVC] human gut metagenome; faeces
108
23
-
Leu
CAG
[ENA]
¢þ
>WENV183309637
OLVC01001011
[OLVC] human gut metagenome; faeces
121
45
-
Val
GAC
[ENA]
¢þ
>WENV183309640
OLVC01001419
[OLVC] human gut metagenome; faeces
146
217
+
Gly
GCC
[ENA]
¢þ
>WENV183309635
OLVC01000776
[OLVC] human gut metagenome; faeces
186
272
+
Leu
TAA
[ENA]
¢þ
>WENV183309647
OLVC01001766
[OLVC] human gut metagenome; faeces
225
140
-
Leu
CAG
[ENA]
¢þ
>WENV183309641
OLVC01001419
[OLVC] human gut metagenome; faeces
233
321
+
Leu
TAA
[ENA]
¢þ
>WENV183309649
OLVC01002007
[OLVC] human gut metagenome; faeces
287
357
+
Gly
CCC
[ENA]
¢þ
>WENV183309642
OLVC01001419
[OLVC] human gut metagenome; faeces
326
400
+
Arg
ACG
[ENA]
¢þ
>WENV183309646
OLVC01001721
[OLVC] human gut metagenome; faeces
357
432
+
Arg
TCT
[ENA]
¢þ
>WENV183309626
OLVC01000451
[OLVC] human gut metagenome; faeces
378
303
-
Gln
CTG
[ENA]
¢þ
>WENV183309643
OLVC01001419
[OLVC] human gut metagenome; faeces
405
479
+
Pro
TGG
[ENA]
¢þ
>WENV183309650
OLVC01002042
[OLVC] human gut metagenome; faeces
416
491
+
Asp
GTC
[ENA]
¢þ
>WENV183309615
OLVC01000338
[OLVC] human gut metagenome; faeces
634
550
-
Tyr
GTA
[ENA]
¢þ
>WENV183309645
OLVC01001613
[OLVC] human gut metagenome; faeces
739
665
-
Ala
TGC
[ENA]
¢þ
>WENV183309591
OLVC01000055
[OLVC] human gut metagenome; faeces
992
916
-
fMet
CAT
[ENA]
¢þ
>WENV183309644
OLVC01001433
[OLVC] human gut metagenome; faeces
1001
926
-
Asn
GTT
[ENA]
¢þ
>WENV183309622
OLVC01000391
[OLVC] human gut metagenome; faeces
1014
942
-
Arg
CCT
[ENA]
¢þ
>WENV183309638
OLVC01001330
[OLVC] human gut metagenome; faeces
1035
1124
+
Ser
CGA
[ENA]
¢þ
>WENV183309636
OLVC01000796
[OLVC] human gut metagenome; faeces
1043
970
-
Thr
AGT
[ENA]
¢þ
>WENV183309623
OLVC01000413
[OLVC] human gut metagenome; faeces
1065
990
-
Thr
CGT
[ENA]
¢þ
>WENV183309625
OLVC01000451
[OLVC] human gut metagenome; faeces
1137
1063
-
Glu
CTC
[ENA]
¢þ
>WENV183309607
OLVC01000227
[OLVC] human gut metagenome; faeces
1354
1429
+
Thr
TGT
[ENA]
¢þ
>WENV183309608
OLVC01000227
[OLVC] human gut metagenome; faeces
1438
1522
+
Tyr
GTA
[ENA]
¢þ
>WENV183309613
OLVC01000228
[OLVC] human gut metagenome; faeces
1527
1452
-
Lys
TTT
[ENA]
¢þ
>WENV183309614
OLVC01000266
[OLVC] human gut metagenome; faeces
1541
1467
-
Thr
GGT
[ENA]
¢þ
>WENV183309602
OLVC01000176
[OLVC] human gut metagenome; faeces
1549
1473
-
Asp
GTC
[ENA]
¢þ
>WENV183309600
OLVC01000135
[OLVC] human gut metagenome; faeces
1592
1516
-
Pro
GGG
[ENA]
¢þ
>WENV183309612
OLVC01000228
[OLVC] human gut metagenome; faeces
1606
1531
-
Val
TAC
[ENA]
¢þ
>WENV183309609
OLVC01000227
[OLVC] human gut metagenome; faeces
1639
1713
+
Gly
TCC
[ENA]
¢þ
>WENV183309610
OLVC01000227
[OLVC] human gut metagenome; faeces
1720
1795
+
Thr
GGT
[ENA]
¢þ
>WENV183309631
OLVC01000466
[OLVC] human gut metagenome; faeces
1896
1812
-
Leu
CAA
[ENA]
¢þ
>WENV183309620
OLVC01000345
[OLVC] human gut metagenome; faeces
2076
2002
-
Ala
TGC
[ENA]
¢þ
>WENV183309627
OLVC01000452
[OLVC] human gut metagenome; faeces
2138
2219
+
Tyr
GTA
[ENA]
¢þ
>WENV183309619
OLVC01000345
[OLVC] human gut metagenome; faeces
2193
2118
-
Ile
GAT
[ENA]
¢þ
>WENV183309628
OLVC01000452
[OLVC] human gut metagenome; faeces
2225
2300
+
His
GTG
[ENA]
¢þ
>WENV183309618
OLVC01000345
[OLVC] human gut metagenome; faeces
2275
2205
-
Gly
TCC
[ENA]
¢þ
>WENV183309629
OLVC01000452
[OLVC] human gut metagenome; faeces
2360
2430
+
Cys
GCA
[ENA]
¢þ
>WENV183309617
OLVC01000345
[OLVC] human gut metagenome; faeces
2375
2301
-
Phe
GAA
[ENA]
¢þ
>WENV183309630
OLVC01000452
[OLVC] human gut metagenome; faeces
2446
2532
+
Leu
CAA
[ENA]
¢þ
>WENV183309616
OLVC01000345
[OLVC] human gut metagenome; faeces
2477
2405
-
Val
TAC
[ENA]
¢þ
>WENV183309597
OLVC01000101
[OLVC] human gut metagenome; faeces
2753
2677
-
Arg
TCT
[ENA]
¢þ
>WENV183309603
OLVC01000183
[OLVC] human gut metagenome; faeces
3498
3423
-
Gly
GCC
[ENA]
¢þ
>WENV183309599
OLVC01000127
[OLVC] human gut metagenome; faeces
3894
3808
-
Leu
GAG
[ENA]
¢þ
>WENV183309624
OLVC01000440
[OLVC] human gut metagenome; faeces
3896
3820
-
Pro
TGG
[ENA]
¢þ
>WENV183309611
OLVC01000228
[OLVC] human gut metagenome; faeces
4305
4380
+
Ala
GGC
[ENA]
¢þ
>WENV183309621
OLVC01000387
[OLVC] human gut metagenome; faeces
4439
4515
+
Pro
CGG
[ENA]
¢þ
>WENV183309601
OLVC01000160
[OLVC] human gut metagenome; faeces
4690
4616
-
Arg
CCT
[ENA]
¢þ
>WENV183309589
OLVC01000049
[OLVC] human gut metagenome; faeces
5495
5582
+
Ser
TGA
[ENA]
¢þ
>WENV183309604
OLVC01000195
[OLVC] human gut metagenome; faeces
5988
5913
-
Glu
TTC
[ENA]
¢þ
>WENV183309588
OLVC01000047
[OLVC] human gut metagenome; faeces
6246
6321
+
Phe
GAA
[ENA]
¢þ
>WENV183309605
OLVC01000199
[OLVC] human gut metagenome; faeces
7334
7426
+
Ser
GCT
[ENA]
¢þ
>WENV183309606
OLVC01000199
[OLVC] human gut metagenome; faeces
7430
7506
+
Arg
ACG
[ENA]
¢þ
>WENV183309592
OLVC01000073
[OLVC] human gut metagenome; faeces
7807
7720
-
Ser
GGA
[ENA]
¢þ
>WENV183309595
OLVC01000084
[OLVC] human gut metagenome; faeces
9066
9142
+
Met
CAT
[ENA]
¢þ
>WENV183309596
OLVC01000084
[OLVC] human gut metagenome; faeces
9191
9265
+
Gln
CTG
[ENA]
¢þ
>WENV183309598
OLVC01000116
[OLVC] human gut metagenome; faeces
9314
9387
+
Gly
CCC
[ENA]
¢þ
>WENV183309590
OLVC01000053
[OLVC] human gut metagenome; faeces
11991
12066
+
Lys
CTT
[ENA]
¢þ
>WENV183309593
OLVC01000074
[OLVC] human gut metagenome; faeces
12342
12418
+
Arg
CCG
[ENA]
¢þ
>WENV183309594
OLVC01000074
[OLVC] human gut metagenome; faeces
12477
12552
+
His
GTG
[ENA]
¢þ
>WENV183309587
OLVC01000033
[OLVC] human gut metagenome; faeces
17847
17772
-
Ile2
CAT
[ENA]
¢þ
>WENV183309586
OLVC01000004
[OLVC] human gut metagenome; faeces
24900
24994
+
SeC
TCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK