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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OLVD] human gut metagenome; faeces
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183309686
OLVD01004096
[OLVD] human gut metagenome; faeces
7
81
+
His
GTG
[ENA]
¢þ
>WENV183309679
OLVD01003305
[OLVD] human gut metagenome; faeces
14
86
+
Gln
CTG
[ENA]
¢þ
>WENV183309681
OLVD01004011
[OLVD] human gut metagenome; faeces
59
141
+
Tyr
GTA
[ENA]
¢þ
>WENV183309687
OLVD01004096
[OLVD] human gut metagenome; faeces
89
163
+
Gln
TTG
[ENA]
¢þ
>WENV183309678
OLVD01003080
[OLVD] human gut metagenome; faeces
121
46
-
fMet
CAT
[ENA]
¢þ
>WENV183309682
OLVD01004011
[OLVD] human gut metagenome; faeces
157
231
+
Thr
TGT
[ENA]
¢þ
>WENV183309688
OLVD01004096
[OLVD] human gut metagenome; faeces
171
244
+
Lys
TTT
[ENA]
¢þ
>WENV183309676
OLVD01003038
[OLVD] human gut metagenome; faeces
183
273
+
Ser
TGA
[ENA]
¢þ
>WENV183309670
OLVD01001517
[OLVD] human gut metagenome; faeces
191
117
-
Cys
GCA
[ENA]
¢þ
>WENV183309656
OLVD01000514
[OLVD] human gut metagenome; faeces
193
268
+
Ala
TGC
[ENA]
¢þ
>WENV183309665
OLVD01000898
[OLVD] human gut metagenome; faeces
213
142
-
Thr
GGT
[ENA]
¢þ
>WENV183309661
OLVD01000746
[OLVD] human gut metagenome; faeces
234
307
+
Ala
TGC
[ENA]
¢þ
>WENV183309683
OLVD01004011
[OLVD] human gut metagenome; faeces
234
309
+
Ile2
CAT
[ENA]
¢þ
>WENV183309675
OLVD01002570
[OLVD] human gut metagenome; faeces
258
172
-
Leu
AAG
[ENA]
¢þ
>WENV183309660
OLVD01000728
[OLVD] human gut metagenome; faeces
263
177
-
Ser
TGA
[ENA]
¢þ
>WENV183309657
OLVD01000514
[OLVD] human gut metagenome; faeces
272
348
+
Ile
GAT
[ENA]
¢þ
>WENV183309664
OLVD01000892
[OLVD] human gut metagenome; faeces
287
362
+
Arg
ACG
[ENA]
¢þ
>WENV183309669
OLVD01001517
[OLVD] human gut metagenome; faeces
312
237
-
Gly
GCC
[ENA]
¢þ
>WENV183309677
OLVD01003038
[OLVD] human gut metagenome; faeces
314
404
+
Ser
GCT
[ENA]
¢þ
>WENV183309684
OLVD01004011
[OLVD] human gut metagenome; faeces
323
398
+
Asp
GTC
[ENA]
¢þ
>WENV183309662
OLVD01000746
[OLVD] human gut metagenome; faeces
329
404
+
Ile
GAT
[ENA]
¢þ
>WENV183309672
OLVD01002368
[OLVD] human gut metagenome; faeces
387
460
+
Arg
TCT
[ENA]
¢þ
>WENV183309668
OLVD01001517
[OLVD] human gut metagenome; faeces
425
350
-
Phe
GAA
[ENA]
¢þ
>WENV183309685
OLVD01004011
[OLVD] human gut metagenome; faeces
439
513
+
Val
TAC
[ENA]
¢þ
>WENV183309673
OLVD01002368
[OLVD] human gut metagenome; faeces
468
544
+
His
GTG
[ENA]
¢þ
>WENV183309680
OLVD01003927
[OLVD] human gut metagenome; faeces
499
414
-
Leu
CAG
[ENA]
¢þ
>WENV183309667
OLVD01001517
[OLVD] human gut metagenome; faeces
505
429
-
Asp
GTC
[ENA]
¢þ
>WENV183309666
OLVD01001419
[OLVD] human gut metagenome; faeces
587
514
-
Glu
CTC
[ENA]
¢þ
>WENV183309674
OLVD01002368
[OLVD] human gut metagenome; faeces
591
665
+
Gln
TTG
[ENA]
¢þ
>WENV183309663
OLVD01000778
[OLVD] human gut metagenome; faeces
619
694
+
Lys
CTT
[ENA]
¢þ
>WENV183309671
OLVD01002265
[OLVD] human gut metagenome; faeces
665
591
-
Glu
TTC
[ENA]
¢þ
>WENV183309654
OLVD01000256
[OLVD] human gut metagenome; faeces
814
884
+
Gly
TCC
[ENA]
¢þ
>WENV183309655
OLVD01000256
[OLVD] human gut metagenome; faeces
888
961
+
Gly
GCC
[ENA]
¢þ
>WENV183309659
OLVD01000597
[OLVD] human gut metagenome; faeces
915
989
+
Pro
CGG
[ENA]
¢þ
>WENV183309658
OLVD01000591
[OLVD] human gut metagenome; faeces
1175
1099
-
Arg
CCT
[ENA]
¢þ
>WENV183309651
OLVD01000048
[OLVD] human gut metagenome; faeces
2458
2532
+
Asn
GTT
[ENA]
¢þ
>WENV183309652
OLVD01000048
[OLVD] human gut metagenome; faeces
2535
2608
+
Glu
TTC
[ENA]
¢þ
>WENV183309653
OLVD01000048
[OLVD] human gut metagenome; faeces
2646
2717
+
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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