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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OLVG] human gut metagenome; faeces
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183309745
OLVG01000034
[OLVG] human gut metagenome; faeces
26
97
+
Cys
GCA
[ENA]
¢þ
>WENV183309750
OLVG01000256
[OLVG] human gut metagenome; faeces
131
57
-
Glu
CTC
[ENA]
¢þ
>WENV183309760
OLVG01000691
[OLVG] human gut metagenome; faeces
222
147
-
Arg
TCT
[ENA]
¢þ
>WENV183309763
OLVG01001165
[OLVG] human gut metagenome; faeces
289
364
+
Val
TAC
[ENA]
¢þ
>WENV183309757
OLVG01000596
[OLVG] human gut metagenome; faeces
335
409
+
Asn
GTT
[ENA]
¢þ
>WENV183309743
OLVG01000022
[OLVG] human gut metagenome; faeces
462
378
-
Leu
TAG
[ENA]
¢þ
>WENV183309749
OLVG01000228
[OLVG] human gut metagenome; faeces
745
816
+
Gln
CTG
[ENA]
¢þ
>WENV183309762
OLVG01000979
[OLVG] human gut metagenome; faeces
834
908
+
Thr
TGT
[ENA]
¢þ
>WENV183309756
OLVG01000460
[OLVG] human gut metagenome; faeces
946
873
-
Phe
GAA
[ENA]
¢þ
>WENV183309748
OLVG01000093
[OLVG] human gut metagenome; faeces
1054
972
-
Tyr
GTA
[ENA]
¢þ
>WENV183309755
OLVG01000460
[OLVG] human gut metagenome; faeces
1102
1177
+
Pro
CGG
[ENA]
¢þ
>WENV183309739
OLVG01000015
[OLVG] human gut metagenome; faeces
1134
1208
+
Pro
TGG
[ENA]
¢þ
>WENV183309761
OLVG01000753
[OLVG] human gut metagenome; faeces
1135
1062
-
Trp
CCA
[ENA]
¢þ
>WENV183309746
OLVG01000057
[OLVG] human gut metagenome; faeces
1196
1283
+
Leu
TAA
[ENA]
¢þ
>WENV183309758
OLVG01000620
[OLVG] human gut metagenome; faeces
1401
1489
+
Ser
GGA
[ENA]
¢þ
>WENV183309759
OLVG01000641
[OLVG] human gut metagenome; faeces
1423
1507
+
Leu
CAA
[ENA]
¢þ
>WENV183309741
OLVG01000019
[OLVG] human gut metagenome; faeces
1670
1742
+
Arg
CCT
[ENA]
¢þ
>WENV183309754
OLVG01000328
[OLVG] human gut metagenome; faeces
1721
1636
-
Ser
TGA
[ENA]
¢þ
>WENV183309753
OLVG01000301
[OLVG] human gut metagenome; faeces
2339
2412
+
Lys
CTT
[ENA]
¢þ
>WENV183309740
OLVG01000017
[OLVG] human gut metagenome; faeces
2394
2321
-
Phe
GAA
[ENA]
¢þ
>WENV183309752
OLVG01000265
[OLVG] human gut metagenome; faeces
2773
2702
-
Gly
CCC
[ENA]
¢þ
>WENV183309751
OLVG01000265
[OLVG] human gut metagenome; faeces
2878
2805
-
Thr
CGT
[ENA]
¢þ
>WENV183309744
OLVG01000031
[OLVG] human gut metagenome; faeces
5608
5535
-
Lys
TTT
[ENA]
¢þ
>WENV183309747
OLVG01000076
[OLVG] human gut metagenome; faeces
6920
6848
-
Thr
GGT
[ENA]
¢þ
>WENV183309742
OLVG01000019
[OLVG] human gut metagenome; faeces
8791
8720
-
Gln
TTG
[ENA]
¢þ
>WENV183309738
OLVG01000003
[OLVG] human gut metagenome; faeces
11650
11576
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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