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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLVN] human gut metagenome; faeces
HIT:
65 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183310064
OLVN01000578
[OLVN] human gut metagenome; faeces
4
78
+
Lys
TTT
[ENA]
¢þ
>WENV183310075
OLVN01001520
[OLVN] human gut metagenome; faeces
4
81
+
Asp
GTC
[ENA]
¢þ
>WENV183310088
OLVN01002614
[OLVN] human gut metagenome; faeces
34
107
+
fMet
CAT
[ENA]
¢þ
>WENV183310073
OLVN01000794
[OLVN] human gut metagenome; faeces
77
4
-
Gly
GCC
[ENA]
¢þ
>WENV183310087
OLVN01002403
[OLVN] human gut metagenome; faeces
115
43
-
Glu
TTC
[ENA]
¢þ
>WENV183310074
OLVN01000831
[OLVN] human gut metagenome; faeces
122
193
+
Trp
CCA
[ENA]
¢þ
>WENV183310070
OLVN01000661
[OLVN] human gut metagenome; faeces
130
204
+
Thr
CGT
[ENA]
¢þ
>WENV183310092
OLVN01003115
[OLVN] human gut metagenome; faeces
133
58
-
Pro
CGG
[ENA]
¢þ
>WENV183310072
OLVN01000794
[OLVN] human gut metagenome; faeces
151
81
-
Gly
TCC
[ENA]
¢þ
>WENV183310065
OLVN01000578
[OLVN] human gut metagenome; faeces
174
256
+
Leu
TAG
[ENA]
¢þ
>WENV183310086
OLVN01002403
[OLVN] human gut metagenome; faeces
235
163
-
Asn
GTT
[ENA]
¢þ
>WENV183310093
OLVN01003231
[OLVN] human gut metagenome; faeces
236
309
+
Ala
TGC
[ENA]
¢þ
>WENV183310080
OLVN01001675
[OLVN] human gut metagenome; faeces
242
328
+
Leu
AAG
[ENA]
¢þ
>WENV183310079
OLVN01001663
[OLVN] human gut metagenome; faeces
296
222
-
Ile
GAT
[ENA]
¢þ
>WENV183310044
OLVN01000048
[OLVN] human gut metagenome; faeces
303
212
-
Ser
GGA
[ENA]
¢þ
>WENV183310089
OLVN01002614
[OLVN] human gut metagenome; faeces
324
397
+
Asn
GTT
[ENA]
¢þ
>WENV183310094
OLVN01003231
[OLVN] human gut metagenome; faeces
331
406
+
Ile
GAT
[ENA]
¢þ
>WENV183310083
OLVN01001916
[OLVN] human gut metagenome; faeces
362
436
+
Pro
TGG
[ENA]
¢þ
>WENV183310090
OLVN01002614
[OLVN] human gut metagenome; faeces
404
477
+
Trp
CCA
[ENA]
¢þ
>WENV183310076
OLVN01001520
[OLVN] human gut metagenome; faeces
411
483
+
His
GTG
[ENA]
¢þ
>WENV183310084
OLVN01001916
[OLVN] human gut metagenome; faeces
437
507
+
fMet
CAT
[ENA]
¢þ
>WENV183310091
OLVN01002614
[OLVN] human gut metagenome; faeces
482
553
+
Gln
TTG
[ENA]
¢þ
>WENV183310077
OLVN01001520
[OLVN] human gut metagenome; faeces
490
563
+
Trp
CCA
[ENA]
¢þ
>WENV183310066
OLVN01000583
[OLVN] human gut metagenome; faeces
529
457
-
Glu
CTC
[ENA]
¢þ
>WENV183310043
OLVN01000048
[OLVN] human gut metagenome; faeces
549
463
-
Ser
TGA
[ENA]
¢þ
>WENV183310085
OLVN01002114
[OLVN] human gut metagenome; faeces
588
659
+
Thr
GGT
[ENA]
¢þ
>WENV183310032
OLVN01000012
[OLVN] human gut metagenome; faeces
601
676
+
Arg
CCT
[ENA]
¢þ
>WENV183310081
OLVN01001678
[OLVN] human gut metagenome; faeces
619
694
+
Sup
CTA
[ENA]
¢þ
>WENV183310082
OLVN01001752
[OLVN] human gut metagenome; faeces
701
777
+
Pro
GGG
[ENA]
¢þ
>WENV183310078
OLVN01001520
[OLVN] human gut metagenome; faeces
744
825
+
Tyr
GTA
[ENA]
¢þ
>WENV183310067
OLVN01000607
[OLVN] human gut metagenome; faeces
971
1043
+
Asn
GTT
[ENA]
¢þ
>WENV183310051
OLVN01000163
[OLVN] human gut metagenome; faeces
1290
1364
+
Val
TAC
[ENA]
¢þ
>WENV183310068
OLVN01000607
[OLVN] human gut metagenome; faeces
1305
1380
+
Trp
CCA
[ENA]
¢þ
>WENV183310052
OLVN01000163
[OLVN] human gut metagenome; faeces
1366
1453
+
Leu
TAA
[ENA]
¢þ
>WENV183310069
OLVN01000607
[OLVN] human gut metagenome; faeces
1389
1479
+
Ser
TGA
[ENA]
¢þ
>WENV183310033
OLVN01000020
[OLVN] human gut metagenome; faeces
1562
1636
+
His
GTG
[ENA]
¢þ
>WENV183310071
OLVN01000794
[OLVN] human gut metagenome; faeces
1574
1662
+
Ser
CGA
[ENA]
¢þ
>WENV183310034
OLVN01000020
[OLVN] human gut metagenome; faeces
1911
1986
+
Phe
GAA
[ENA]
¢þ
>WENV183310063
OLVN01000513
[OLVN] human gut metagenome; faeces
1914
1839
-
Ile2
CAT
[ENA]
¢þ
>WENV183310062
OLVN01000513
[OLVN] human gut metagenome; faeces
2429
2350
-
Leu
CAA
[ENA]
¢þ
>WENV183310061
OLVN01000389
[OLVN] human gut metagenome; faeces
3069
2996
-
Lys
CTT
[ENA]
¢þ
>WENV183310035
OLVN01000020
[OLVN] human gut metagenome; faeces
3263
3336
+
Glu
CTC
[ENA]
¢þ
>WENV183310053
OLVN01000312
[OLVN] human gut metagenome; faeces
3358
3433
+
Pro
TGG
[ENA]
¢þ
>WENV183310060
OLVN01000339
[OLVN] human gut metagenome; faeces
3452
3381
-
Cys
GCA
[ENA]
¢þ
>WENV183310054
OLVN01000312
[OLVN] human gut metagenome; faeces
3468
3538
+
Gly
TCC
[ENA]
¢þ
>WENV183310055
OLVN01000312
[OLVN] human gut metagenome; faeces
3560
3634
+
Arg
TCT
[ENA]
¢þ
>WENV183310059
OLVN01000339
[OLVN] human gut metagenome; faeces
3563
3490
-
Glu
TTC
[ENA]
¢þ
>WENV183310048
OLVN01000133
[OLVN] human gut metagenome; faeces
3626
3554
-
Gln
CTG
[ENA]
¢þ
>WENV183310056
OLVN01000312
[OLVN] human gut metagenome; faeces
3639
3713
+
His
GTG
[ENA]
¢þ
>WENV183310058
OLVN01000339
[OLVN] human gut metagenome; faeces
3640
3566
-
Asn
GTT
[ENA]
¢þ
>WENV183310057
OLVN01000312
[OLVN] human gut metagenome; faeces
3721
3795
+
Gln
TTG
[ENA]
¢þ
>WENV183310036
OLVN01000020
[OLVN] human gut metagenome; faeces
3734
3806
+
Asp
GTC
[ENA]
¢þ
>WENV183310037
OLVN01000020
[OLVN] human gut metagenome; faeces
3869
3942
+
Thr
TGT
[ENA]
¢þ
>WENV183310047
OLVN01000125
[OLVN] human gut metagenome; faeces
4425
4499
+
Pro
CGG
[ENA]
¢þ
>WENV183310049
OLVN01000135
[OLVN] human gut metagenome; faeces
5307
5223
-
Leu
CAA
[ENA]
¢þ
>WENV183310038
OLVN01000020
[OLVN] human gut metagenome; faeces
6393
6464
+
Gln
TTG
[ENA]
¢þ
>WENV183310050
OLVN01000137
[OLVN] human gut metagenome; faeces
6514
6588
+
Phe
GAA
[ENA]
¢þ
>WENV183310039
OLVN01000020
[OLVN] human gut metagenome; faeces
6546
6620
+
Met
CAT
[ENA]
¢þ
>WENV183310046
OLVN01000108
[OLVN] human gut metagenome; faeces
7504
7419
-
Leu
CAG
[ENA]
¢þ
>WENV183310040
OLVN01000020
[OLVN] human gut metagenome; faeces
8624
8705
+
Leu
TAG
[ENA]
¢þ
>WENV183310045
OLVN01000064
[OLVN] human gut metagenome; faeces
9045
9117
+
Gly
TCC
[ENA]
¢þ
>WENV183310041
OLVN01000020
[OLVN] human gut metagenome; faeces
10460
10546
+
Leu
TAA
[ENA]
¢þ
>WENV183310030
OLVN01000003
[OLVN] human gut metagenome; faeces
10619
10693
+
Arg
ACG
[ENA]
¢þ
>WENV183310042
OLVN01000020
[OLVN] human gut metagenome; faeces
16736
16808
+
Arg
ACG
[ENA]
¢þ
>WENV183310031
OLVN01000008
[OLVN] human gut metagenome; faeces
22007
22096
+
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK