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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA gene List
[OLYD] human gut metagenome; feces
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183379860
OLYD01000972
[OLYD] human gut metagenome; feces
82
156
+
Asn
GTT
[ENA]
¢þ
>WENV183379856
OLYD01000663
[OLYD] human gut metagenome; feces
162
86
-
Ile
GAT
[ENA]
¢þ
>WENV183379850
OLYD01000161
[OLYD] human gut metagenome; feces
222
149
-
Phe
GAA
[ENA]
¢þ
>WENV183379855
OLYD01000663
[OLYD] human gut metagenome; feces
241
166
-
Ala
TGC
[ENA]
¢þ
>WENV183379861
OLYD01001212
[OLYD] human gut metagenome; feces
259
188
-
Gln
TTG
[ENA]
¢þ
>WENV183379853
OLYD01000454
[OLYD] human gut metagenome; feces
287
200
-
Ser
TGA
[ENA]
¢þ
>WENV183379854
OLYD01000663
[OLYD] human gut metagenome; feces
323
248
-
Ile
GAT
[ENA]
¢þ
>WENV183379859
OLYD01000907
[OLYD] human gut metagenome; feces
353
279
-
Gln
TTG
[ENA]
¢þ
>WENV183379849
OLYD01000059
[OLYD] human gut metagenome; feces
451
379
-
Thr
GGT
[ENA]
¢þ
>WENV183379851
OLYD01000263
[OLYD] human gut metagenome; feces
468
540
+
Glu
TTC
[ENA]
¢þ
>WENV183379858
OLYD01000907
[OLYD] human gut metagenome; feces
476
400
-
His
GTG
[ENA]
¢þ
>WENV183379857
OLYD01000907
[OLYD] human gut metagenome; feces
557
484
-
Arg
TCT
[ENA]
¢þ
>WENV183379848
OLYD01000059
[OLYD] human gut metagenome; feces
633
551
-
Tyr
GTA
[ENA]
¢þ
>WENV183379852
OLYD01000278
[OLYD] human gut metagenome; feces
760
685
-
Pro
GGG
[ENA]
¢þ
>WENV183379847
OLYD01000059
[OLYD] human gut metagenome; feces
785
711
-
Thr
TGT
[ENA]
¢þ
>WENV183379843
OLYD01000011
[OLYD] human gut metagenome; feces
1858
1929
+
Asn
GTT
[ENA]
¢þ
>WENV183379844
OLYD01000011
[OLYD] human gut metagenome; feces
1969
2041
+
Glu
TTC
[ENA]
¢þ
>WENV183379845
OLYD01000011
[OLYD] human gut metagenome; feces
2087
2159
+
Thr
TGT
[ENA]
¢þ
>WENV183379846
OLYD01000011
[OLYD] human gut metagenome; feces
2169
2243
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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