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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLYG] human gut metagenome; feces
HIT:
105 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183380060
OLYG01000038
[OLYG] human gut metagenome; feces
2
78
+
Asp
GTC
[ENA]
¢þ
>WENV183380132
OLYG01008209
[OLYG] human gut metagenome; feces
34
124
+
Ser
CGA
[ENA]
¢þ
>WENV183380147
OLYG01012515
[OLYG] human gut metagenome; feces
41
117
+
Arg
TCT
[ENA]
¢þ
>WENV183380063
OLYG01000047
[OLYG] human gut metagenome; feces
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV183380124
OLYG01005621
[OLYG] human gut metagenome; feces
66
139
+
Ala
TGC
[ENA]
¢þ
>WENV183380061
OLYG01000038
[OLYG] human gut metagenome; feces
85
160
+
Phe
GAA
[ENA]
¢þ
>WENV183380081
OLYG01000510
[OLYG] human gut metagenome; feces
88
13
-
Arg
CCT
[ENA]
¢þ
>WENV183380131
OLYG01008041
[OLYG] human gut metagenome; feces
98
172
+
Ala
TGC
[ENA]
¢þ
>WENV183380152
OLYG01014205
[OLYG] human gut metagenome; feces
103
180
+
fMet
CAT
[ENA]
¢þ
>WENV183380137
OLYG01009630
[OLYG] human gut metagenome; feces
114
40
-
Pro
CGG
[ENA]
¢þ
>WENV183380145
OLYG01012289
[OLYG] human gut metagenome; feces
144
69
-
fMet
CAT
[ENA]
¢þ
>WENV183380115
OLYG01003460
[OLYG] human gut metagenome; feces
145
73
-
Cys
GCA
[ENA]
¢þ
>WENV183380062
OLYG01000038
[OLYG] human gut metagenome; feces
168
243
+
Gly
GCC
[ENA]
¢þ
>WENV183380105
OLYG01002157
[OLYG] human gut metagenome; feces
171
97
-
Lys
TTT
[ENA]
¢þ
>WENV183380099
OLYG01001745
[OLYG] human gut metagenome; feces
176
90
-
Ser
CGA
[ENA]
¢þ
>WENV183380139
OLYG01010588
[OLYG] human gut metagenome; feces
182
91
-
Ser
GGA
[ENA]
¢þ
>WENV183380069
OLYG01000175
[OLYG] human gut metagenome; feces
202
114
-
Ser
CGA
[ENA]
¢þ
>WENV183380123
OLYG01005123
[OLYG] human gut metagenome; feces
203
128
-
Ala
TGC
[ENA]
¢þ
>WENV183380129
OLYG01007294
[OLYG] human gut metagenome; feces
206
281
+
Ala
TGC
[ENA]
¢þ
>WENV183380134
OLYG01008633
[OLYG] human gut metagenome; feces
211
135
-
Arg
CCG
[ENA]
¢þ
>WENV183380106
OLYG01002586
[OLYG] human gut metagenome; feces
212
139
-
Glu
CTC
[ENA]
¢þ
>WENV183380109
OLYG01003120
[OLYG] human gut metagenome; feces
213
129
-
Leu
AAG
[ENA]
¢þ
>WENV183380117
OLYG01003516
[OLYG] human gut metagenome; feces
219
128
-
Ser
GGA
[ENA]
¢þ
>WENV183380114
OLYG01003460
[OLYG] human gut metagenome; feces
221
148
-
Glu
TTC
[ENA]
¢þ
>WENV183380089
OLYG01001007
[OLYG] human gut metagenome; feces
228
303
+
Asp
GTC
[ENA]
¢þ
>WENV183380151
OLYG01013501
[OLYG] human gut metagenome; feces
240
166
-
Gln
TTG
[ENA]
¢þ
>WENV183380125
OLYG01005646
[OLYG] human gut metagenome; feces
241
314
+
Pro
CGG
[ENA]
¢þ
>WENV183380141
OLYG01011786
[OLYG] human gut metagenome; feces
252
325
+
Gln
CTG
[ENA]
¢þ
>WENV183380104
OLYG01002157
[OLYG] human gut metagenome; feces
253
179
-
Gln
TTG
[ENA]
¢þ
>WENV183380144
OLYG01012289
[OLYG] human gut metagenome; feces
256
186
-
Cys
GCA
[ENA]
¢þ
>WENV183380127
OLYG01006839
[OLYG] human gut metagenome; feces
268
344
+
Arg
CCG
[ENA]
¢þ
>WENV183380130
OLYG01007294
[OLYG] human gut metagenome; feces
285
361
+
Ile
GAT
[ENA]
¢þ
>WENV183380113
OLYG01003460
[OLYG] human gut metagenome; feces
297
224
-
Asn
GTT
[ENA]
¢þ
>WENV183380146
OLYG01012318
[OLYG] human gut metagenome; feces
298
373
+
Thr
CGT
[ENA]
¢þ
>WENV183380116
OLYG01003516
[OLYG] human gut metagenome; feces
309
223
-
Ser
TGA
[ENA]
¢þ
>WENV183380090
OLYG01001007
[OLYG] human gut metagenome; feces
309
383
+
Val
TAC
[ENA]
¢þ
>WENV183380136
OLYG01009565
[OLYG] human gut metagenome; feces
314
390
+
Trp
CCA
[ENA]
¢þ
>WENV183380122
OLYG01004822
[OLYG] human gut metagenome; feces
335
254
-
Leu
TAG
[ENA]
¢þ
>WENV183380103
OLYG01002157
[OLYG] human gut metagenome; feces
335
261
-
His
GTG
[ENA]
¢þ
>WENV183380148
OLYG01012523
[OLYG] human gut metagenome; feces
358
287
-
Gln
TTG
[ENA]
¢þ
>WENV183380143
OLYG01012289
[OLYG] human gut metagenome; feces
360
289
-
Glu
TTC
[ENA]
¢þ
>WENV183380072
OLYG01000194
[OLYG] human gut metagenome; feces
378
286
-
Ser
GGA
[ENA]
¢þ
>WENV183380150
OLYG01013501
[OLYG] human gut metagenome; feces
379
304
-
Lys
TTT
[ENA]
¢þ
>WENV183380140
OLYG01011087
[OLYG] human gut metagenome; feces
399
474
+
Thr
CGT
[ENA]
¢þ
>WENV183380091
OLYG01001007
[OLYG] human gut metagenome; feces
399
486
+
Leu
TAA
[ENA]
¢þ
>WENV183380121
OLYG01004722
[OLYG] human gut metagenome; feces
408
334
-
Met
CAT
[ENA]
¢þ
>WENV183380135
OLYG01008707
[OLYG] human gut metagenome; feces
410
497
+
Ser
TGA
[ENA]
¢þ
>WENV183380102
OLYG01002157
[OLYG] human gut metagenome; feces
414
340
-
Arg
TCT
[ENA]
¢þ
>WENV183380111
OLYG01003451
[OLYG] human gut metagenome; feces
414
490
+
fMet
CAT
[ENA]
¢þ
>WENV183380112
OLYG01003460
[OLYG] human gut metagenome; feces
415
326
-
Ser
GCT
[ENA]
¢þ
>WENV183380138
OLYG01010011
[OLYG] human gut metagenome; feces
426
499
+
Gln
TTG
[ENA]
¢þ
>WENV183380149
OLYG01013501
[OLYG] human gut metagenome; feces
459
383
-
His
GTG
[ENA]
¢þ
>WENV183380142
OLYG01012289
[OLYG] human gut metagenome; feces
484
412
-
Asn
GTT
[ENA]
¢þ
>WENV183380097
OLYG01001595
[OLYG] human gut metagenome; feces
498
423
-
Ala
GGC
[ENA]
¢þ
>WENV183380101
OLYG01002157
[OLYG] human gut metagenome; feces
507
437
-
Gly
TCC
[ENA]
¢þ
>WENV183380107
OLYG01002927
[OLYG] human gut metagenome; feces
509
434
-
Val
GAC
[ENA]
¢þ
>WENV183380086
OLYG01000813
[OLYG] human gut metagenome; feces
520
594
+
Glu
CTC
[ENA]
¢þ
>WENV183380133
OLYG01008213
[OLYG] human gut metagenome; feces
540
469
-
Gln
CTG
[ENA]
¢þ
>WENV183380065
OLYG01000103
[OLYG] human gut metagenome; feces
568
643
+
Lys
CTT
[ENA]
¢þ
>WENV183380126
OLYG01005810
[OLYG] human gut metagenome; feces
580
652
+
Val
GAC
[ENA]
¢þ
>WENV183380093
OLYG01001126
[OLYG] human gut metagenome; feces
580
666
+
Leu
CAG
[ENA]
¢þ
>WENV183380087
OLYG01000813
[OLYG] human gut metagenome; feces
636
712
+
Asn
GTT
[ENA]
¢þ
>WENV183380128
OLYG01007112
[OLYG] human gut metagenome; feces
643
569
-
Arg
CCG
[ENA]
¢þ
>WENV183380120
OLYG01004241
[OLYG] human gut metagenome; feces
699
613
-
Leu
CAG
[ENA]
¢þ
>WENV183380066
OLYG01000103
[OLYG] human gut metagenome; feces
702
776
+
Glu
CTC
[ENA]
¢þ
>WENV183380088
OLYG01000868
[OLYG] human gut metagenome; feces
712
803
+
Ser
CGA
[ENA]
¢þ
>WENV183380092
OLYG01001067
[OLYG] human gut metagenome; feces
729
655
-
Pro
CGG
[ENA]
¢þ
>WENV183380110
OLYG01003436
[OLYG] human gut metagenome; feces
730
653
-
Pro
TGG
[ENA]
¢þ
>WENV183380071
OLYG01000180
[OLYG] human gut metagenome; feces
732
646
-
Leu
CAA
[ENA]
¢þ
>WENV183380108
OLYG01003021
[OLYG] human gut metagenome; feces
751
826
+
Lys
CTT
[ENA]
¢þ
>WENV183380082
OLYG01000600
[OLYG] human gut metagenome; feces
815
890
+
Thr
TGT
[ENA]
¢þ
>WENV183380119
OLYG01004062
[OLYG] human gut metagenome; feces
817
744
-
Gly
TCC
[ENA]
¢þ
>WENV183380118
OLYG01003944
[OLYG] human gut metagenome; feces
846
774
-
Arg
CCT
[ENA]
¢þ
>WENV183380098
OLYG01001658
[OLYG] human gut metagenome; feces
910
835
-
Ala
CGC
[ENA]
¢þ
>WENV183380096
OLYG01001588
[OLYG] human gut metagenome; feces
921
845
-
Arg
CCG
[ENA]
¢þ
>WENV183380083
OLYG01000600
[OLYG] human gut metagenome; feces
942
1026
+
Tyr
GTA
[ENA]
¢þ
>WENV183380067
OLYG01000103
[OLYG] human gut metagenome; feces
971
1046
+
Asn
GTT
[ENA]
¢þ
>WENV183380100
OLYG01001953
[OLYG] human gut metagenome; feces
1083
1157
+
Phe
GAA
[ENA]
¢þ
>WENV183380094
OLYG01001186
[OLYG] human gut metagenome; feces
1142
1071
-
Trp
CCA
[ENA]
¢þ
>WENV183380075
OLYG01000273
[OLYG] human gut metagenome; feces
1304
1388
+
Leu
GAG
[ENA]
¢þ
>WENV183380095
OLYG01001430
[OLYG] human gut metagenome; feces
1308
1384
+
His
GTG
[ENA]
¢þ
>WENV183380084
OLYG01000680
[OLYG] human gut metagenome; feces
1327
1410
+
Tyr
GTA
[ENA]
¢þ
>WENV183380085
OLYG01000680
[OLYG] human gut metagenome; feces
1464
1552
+
Leu
TAA
[ENA]
¢þ
>WENV183380074
OLYG01000257
[OLYG] human gut metagenome; feces
1956
2032
+
Pro
TGG
[ENA]
¢þ
>WENV183380080
OLYG01000450
[OLYG] human gut metagenome; feces
2442
2514
+
Gly
TCC
[ENA]
¢þ
>WENV183380070
OLYG01000178
[OLYG] human gut metagenome; feces
2524
2599
+
Ala
GGC
[ENA]
¢þ
>WENV183380079
OLYG01000380
[OLYG] human gut metagenome; feces
2677
2751
+
Cys
GCA
[ENA]
¢þ
>WENV183380068
OLYG01000150
[OLYG] human gut metagenome; feces
2771
2846
+
Trp
CCA
[ENA]
¢þ
>WENV183380078
OLYG01000276
[OLYG] human gut metagenome; feces
3027
2951
-
Arg
CCT
[ENA]
¢þ
>WENV183380076
OLYG01000276
[OLYG] human gut metagenome; feces
3189
3276
+
Ser
TGA
[ENA]
¢þ
>WENV183380073
OLYG01000236
[OLYG] human gut metagenome; feces
3212
3128
-
Leu
TAG
[ENA]
¢þ
>WENV183380077
OLYG01000276
[OLYG] human gut metagenome; feces
3342
3432
+
Ser
GGA
[ENA]
¢þ
>WENV183380064
OLYG01000077
[OLYG] human gut metagenome; feces
5838
5762
-
fMet
CAT
[ENA]
¢þ
>WENV183380052
OLYG01000007
[OLYG] human gut metagenome; feces
6522
6446
-
Ile2
CAT
[ENA]
¢þ
>WENV183380057
OLYG01000015
[OLYG] human gut metagenome; feces
8119
8043
-
Pro
CGG
[ENA]
¢þ
>WENV183380056
OLYG01000015
[OLYG] human gut metagenome; feces
8225
8152
-
Gln
CTG
[ENA]
¢þ
>WENV183380048
OLYG01000001
[OLYG] human gut metagenome; feces
9163
9235
+
Ile
TAT
[ENA]
¢þ
>WENV183380049
OLYG01000001
[OLYG] human gut metagenome; feces
10107
10193
+
Ser
GCT
[ENA]
¢þ
>WENV183380059
OLYG01000021
[OLYG] human gut metagenome; feces
14105
14030
-
Thr
CGT
[ENA]
¢þ
>WENV183380058
OLYG01000018
[OLYG] human gut metagenome; feces
19742
19818
+
Arg
CCG
[ENA]
¢þ
>WENV183380053
OLYG01000008
[OLYG] human gut metagenome; feces
22150
22074
-
Pro
GGG
[ENA]
¢þ
>WENV183380055
OLYG01000014
[OLYG] human gut metagenome; feces
22240
22153
-
Leu
TAA
[ENA]
¢þ
>WENV183380054
OLYG01000014
[OLYG] human gut metagenome; feces
22436
22362
-
Asn
GTT
[ENA]
¢þ
>WENV183380051
OLYG01000007
[OLYG] human gut metagenome; feces
24519
24595
+
Arg
ACG
[ENA]
¢þ
>WENV183380050
OLYG01000002
[OLYG] human gut metagenome; feces
40757
40832
+
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK