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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLYP] human gut metagenome; feces
HIT:
89 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183385536
OLYP01005002
[OLYP] human gut metagenome; feces
11
99
+
Ser
GGA
[ENA]
¢þ
>WENV183385542
OLYP01007716
[OLYP] human gut metagenome; feces
66
138
+
Cys
GCA
[ENA]
¢þ
>WENV183385514
OLYP01001477
[OLYP] human gut metagenome; feces
71
-1
-
Asn
GTT
[ENA]
¢þ
>WENV183385522
OLYP01001851
[OLYP] human gut metagenome; feces
99
25
-
Glu
CTC
[ENA]
¢þ
>WENV183385477
OLYP01000237
[OLYP] human gut metagenome; feces
133
209
+
Pro
CGG
[ENA]
¢þ
>WENV183385475
OLYP01000204
[OLYP] human gut metagenome; feces
159
85
-
Cys
GCA
[ENA]
¢þ
>WENV183385505
OLYP01000744
[OLYP] human gut metagenome; feces
164
90
-
Arg
CCG
[ENA]
¢þ
>WENV183385535
OLYP01004837
[OLYP] human gut metagenome; feces
176
251
+
Pro
TGG
[ENA]
¢þ
>WENV183385533
OLYP01003955
[OLYP] human gut metagenome; feces
218
292
+
Met
CAT
[ENA]
¢þ
>WENV183385474
OLYP01000204
[OLYP] human gut metagenome; feces
264
189
-
Gly
GCC
[ENA]
¢þ
>WENV183385543
OLYP01008477
[OLYP] human gut metagenome; feces
292
218
-
Ala
GGC
[ENA]
¢þ
>WENV183385502
OLYP01000703
[OLYP] human gut metagenome; feces
294
208
-
Leu
CAG
[ENA]
¢þ
>WENV183385534
OLYP01004265
[OLYP] human gut metagenome; feces
315
388
+
Thr
CGT
[ENA]
¢þ
>WENV183385541
OLYP01007479
[OLYP] human gut metagenome; feces
326
244
-
Tyr
GTA
[ENA]
¢þ
>WENV183385519
OLYP01001712
[OLYP] human gut metagenome; feces
340
264
-
fMet
CAT
[ENA]
¢þ
>WENV183385473
OLYP01000204
[OLYP] human gut metagenome; feces
343
268
-
Phe
GAA
[ENA]
¢þ
>WENV183385537
OLYP01005826
[OLYP] human gut metagenome; feces
369
440
+
Gln
CTG
[ENA]
¢þ
>WENV183385526
OLYP01002929
[OLYP] human gut metagenome; feces
375
464
+
Ser
GCT
[ENA]
¢þ
>WENV183385540
OLYP01007249
[OLYP] human gut metagenome; feces
384
311
-
Ile
GAT
[ENA]
¢þ
>WENV183385508
OLYP01000907
[OLYP] human gut metagenome; feces
384
468
+
Leu
CAA
[ENA]
¢þ
>WENV183385486
OLYP01000326
[OLYP] human gut metagenome; feces
405
479
+
Thr
CGT
[ENA]
¢þ
>WENV183385539
OLYP01006275
[OLYP] human gut metagenome; feces
429
356
-
Gly
CCC
[ENA]
¢þ
>WENV183385518
OLYP01001695
[OLYP] human gut metagenome; feces
431
513
+
Leu
TAG
[ENA]
¢þ
>WENV183385527
OLYP01002929
[OLYP] human gut metagenome; feces
468
541
+
Lys
CTT
[ENA]
¢þ
>WENV183385487
OLYP01000326
[OLYP] human gut metagenome; feces
522
597
+
Lys
CTT
[ENA]
¢þ
>WENV183385530
OLYP01003046
[OLYP] human gut metagenome; feces
526
441
-
Ser
TGA
[ENA]
¢þ
>WENV183385520
OLYP01001798
[OLYP] human gut metagenome; feces
550
624
+
Thr
TGT
[ENA]
¢þ
>WENV183385495
OLYP01000455
[OLYP] human gut metagenome; feces
555
481
-
Cys
GCA
[ENA]
¢þ
>WENV183385528
OLYP01002929
[OLYP] human gut metagenome; feces
556
628
+
Glu
CTC
[ENA]
¢þ
>WENV183385499
OLYP01000673
[OLYP] human gut metagenome; feces
567
485
-
Leu
CAA
[ENA]
¢þ
>WENV183385524
OLYP01002682
[OLYP] human gut metagenome; feces
577
503
-
Gln
TTG
[ENA]
¢þ
>WENV183385538
OLYP01006182
[OLYP] human gut metagenome; feces
596
522
-
Ile2
CAT
[ENA]
¢þ
>WENV183385506
OLYP01000811
[OLYP] human gut metagenome; feces
616
541
-
His
GTG
[ENA]
¢þ
>WENV183385513
OLYP01001448
[OLYP] human gut metagenome; feces
622
548
-
Asp
GTC
[ENA]
¢þ
>WENV183385523
OLYP01002357
[OLYP] human gut metagenome; feces
640
566
-
Ala
GGC
[ENA]
¢þ
>WENV183385521
OLYP01001798
[OLYP] human gut metagenome; feces
667
750
+
Tyr
GTA
[ENA]
¢þ
>WENV183385532
OLYP01003460
[OLYP] human gut metagenome; feces
748
672
-
Pro
GGG
[ENA]
¢þ
>WENV183385529
OLYP01002959
[OLYP] human gut metagenome; feces
771
843
+
Arg
CCG
[ENA]
¢þ
>WENV183385465
OLYP01000086
[OLYP] human gut metagenome; feces
797
873
+
Arg
ACG
[ENA]
¢þ
>WENV183385466
OLYP01000087
[OLYP] human gut metagenome; feces
801
876
+
Ile2
CAT
[ENA]
¢þ
>WENV183385469
OLYP01000122
[OLYP] human gut metagenome; feces
855
781
-
Thr
TGT
[ENA]
¢þ
>WENV183385531
OLYP01003353
[OLYP] human gut metagenome; feces
873
801
-
Thr
GGT
[ENA]
¢þ
>WENV183385509
OLYP01000918
[OLYP] human gut metagenome; feces
931
1016
+
Leu
AAG
[ENA]
¢þ
>WENV183385525
OLYP01002695
[OLYP] human gut metagenome; feces
944
1028
+
Leu
TAG
[ENA]
¢þ
>WENV183385503
OLYP01000717
[OLYP] human gut metagenome; feces
994
1067
+
fMet
CAT
[ENA]
¢þ
>WENV183385512
OLYP01001313
[OLYP] human gut metagenome; feces
1046
974
-
Glu
TTC
[ENA]
¢þ
>WENV183385511
OLYP01001014
[OLYP] human gut metagenome; feces
1051
1124
+
Trp
CCA
[ENA]
¢þ
>WENV183385483
OLYP01000287
[OLYP] human gut metagenome; feces
1154
1081
-
Pro
CGG
[ENA]
¢þ
>WENV183385517
OLYP01001656
[OLYP] human gut metagenome; feces
1166
1240
+
Arg
TCT
[ENA]
¢þ
>WENV183385494
OLYP01000433
[OLYP] human gut metagenome; feces
1173
1081
-
Ser
GCT
[ENA]
¢þ
>WENV183385515
OLYP01001567
[OLYP] human gut metagenome; feces
1184
1257
+
Gly
GCC
[ENA]
¢þ
>WENV183385482
OLYP01000287
[OLYP] human gut metagenome; feces
1243
1170
-
Phe
GAA
[ENA]
¢þ
>WENV183385500
OLYP01000685
[OLYP] human gut metagenome; feces
1260
1336
+
Val
TAC
[ENA]
¢þ
>WENV183385516
OLYP01001567
[OLYP] human gut metagenome; feces
1285
1367
+
Leu
CAG
[ENA]
¢þ
>WENV183385463
OLYP01000076
[OLYP] human gut metagenome; feces
1357
1282
-
Lys
TTT
[ENA]
¢þ
>WENV183385507
OLYP01000879
[OLYP] human gut metagenome; feces
1370
1296
-
Val
GAC
[ENA]
¢þ
>WENV183385456
OLYP01000019
[OLYP] human gut metagenome; feces
1437
1514
+
Asp
GTC
[ENA]
¢þ
>WENV183385457
OLYP01000026
[OLYP] human gut metagenome; feces
1513
1589
+
Arg
TCT
[ENA]
¢þ
>WENV183385489
OLYP01000327
[OLYP] human gut metagenome; feces
1517
1442
-
Trp
CCA
[ENA]
¢þ
>WENV183385470
OLYP01000127
[OLYP] human gut metagenome; feces
1637
1563
-
His
GTG
[ENA]
¢þ
>WENV183385492
OLYP01000411
[OLYP] human gut metagenome; feces
1810
1736
-
Gln
CTG
[ENA]
¢þ
>WENV183385496
OLYP01000504
[OLYP] human gut metagenome; feces
1820
1736
-
Leu
TAG
[ENA]
¢þ
>WENV183385510
OLYP01000925
[OLYP] human gut metagenome; feces
1821
1908
+
Ser
TGA
[ENA]
¢þ
>WENV183385501
OLYP01000690
[OLYP] human gut metagenome; feces
1892
1967
+
Lys
TTT
[ENA]
¢þ
>WENV183385498
OLYP01000635
[OLYP] human gut metagenome; feces
1902
1827
-
Glu
CTC
[ENA]
¢þ
>WENV183385504
OLYP01000725
[OLYP] human gut metagenome; feces
2136
2051
-
Tyr
GTA
[ENA]
¢þ
>WENV183385479
OLYP01000248
[OLYP] human gut metagenome; feces
2179
2105
-
Ala
TGC
[ENA]
¢þ
>WENV183385478
OLYP01000248
[OLYP] human gut metagenome; feces
2270
2196
-
Ile
GAT
[ENA]
¢þ
>WENV183385491
OLYP01000410
[OLYP] human gut metagenome; feces
2372
2447
+
Glu
TTC
[ENA]
¢þ
>WENV183385497
OLYP01000606
[OLYP] human gut metagenome; feces
2475
2399
-
Pro
TGG
[ENA]
¢þ
>WENV183385462
OLYP01000053
[OLYP] human gut metagenome; feces
2527
2601
+
Ile2
CAT
[ENA]
¢þ
>WENV183385490
OLYP01000402
[OLYP] human gut metagenome; feces
2887
2962
+
Ala
CGC
[ENA]
¢þ
>WENV183385488
OLYP01000327
[OLYP] human gut metagenome; feces
2914
2840
-
Thr
GGT
[ENA]
¢þ
>WENV183385480
OLYP01000275
[OLYP] human gut metagenome; feces
2943
3026
+
Leu
TAA
[ENA]
¢þ
>WENV183385493
OLYP01000413
[OLYP] human gut metagenome; feces
2959
3031
+
Cys
GCA
[ENA]
¢þ
>WENV183385476
OLYP01000219
[OLYP] human gut metagenome; feces
3122
3046
-
Pro
GGG
[ENA]
¢þ
>WENV183385472
OLYP01000183
[OLYP] human gut metagenome; feces
3157
3083
-
Val
CAC
[ENA]
¢þ
>WENV183385461
OLYP01000039
[OLYP] human gut metagenome; feces
3349
3423
+
Gly
GCC
[ENA]
¢þ
>WENV183385485
OLYP01000306
[OLYP] human gut metagenome; feces
3557
3485
-
Arg
CCT
[ENA]
¢þ
>WENV183385484
OLYP01000291
[OLYP] human gut metagenome; feces
3636
3710
+
Val
TAC
[ENA]
¢þ
>WENV183385481
OLYP01000280
[OLYP] human gut metagenome; feces
3655
3747
+
Ser
CGA
[ENA]
¢þ
>WENV183385464
OLYP01000083
[OLYP] human gut metagenome; feces
3808
3883
+
Ala
GGC
[ENA]
¢þ
>WENV183385468
OLYP01000106
[OLYP] human gut metagenome; feces
4908
4835
-
Gly
CCC
[ENA]
¢þ
>WENV183385467
OLYP01000106
[OLYP] human gut metagenome; feces
5052
5125
+
Gly
TCC
[ENA]
¢þ
>WENV183385471
OLYP01000133
[OLYP] human gut metagenome; feces
5114
5040
-
Met
CAT
[ENA]
¢þ
>WENV183385460
OLYP01000032
[OLYP] human gut metagenome; feces
5888
5814
-
Arg
CCT
[ENA]
¢þ
>WENV183385458
OLYP01000026
[OLYP] human gut metagenome; feces
7886
7961
+
Ala
TGC
[ENA]
¢þ
>WENV183385459
OLYP01000026
[OLYP] human gut metagenome; feces
8043
8119
+
Ile
GAT
[ENA]
¢þ
>WENV183385455
OLYP01000006
[OLYP] human gut metagenome; feces
17442
17353
-
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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