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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OLZK] human gut metagenome; feces
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183397585
OLZK01000215
[OLZK] human gut metagenome; feces
414
340
-
Ile2
CAT
[ENA]
¢þ
>WENV183397584
OLZK01000121
[OLZK] human gut metagenome; feces
773
844
+
Gln
TTG
[ENA]
¢þ
>WENV183397582
OLZK01000091
[OLZK] human gut metagenome; feces
776
704
-
Thr
GGT
[ENA]
¢þ
>WENV183397583
OLZK01000107
[OLZK] human gut metagenome; feces
812
886
+
Glu
CTC
[ENA]
¢þ
>WENV183397581
OLZK01000091
[OLZK] human gut metagenome; feces
971
888
-
Tyr
GTA
[ENA]
¢þ
>WENV183397580
OLZK01000003
[OLZK] human gut metagenome; feces
3884
3810
-
Ala
TGC
[ENA]
¢þ
>WENV183397579
OLZK01000003
[OLZK] human gut metagenome; feces
3975
3901
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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