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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLZS] human gut metagenome; feces
HIT:
110 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183400793
OLZS01003277
[OLZS] human gut metagenome; feces
5
78
+
Trp
CCA
[ENA]
¢þ
>WENV183400807
OLZS01007983
[OLZS] human gut metagenome; feces
33
106
+
Asp
GTC
[ENA]
¢þ
>WENV183400819
OLZS01009369
[OLZS] human gut metagenome; feces
52
128
+
Asp
GTC
[ENA]
¢þ
>WENV183400799
OLZS01004104
[OLZS] human gut metagenome; feces
66
138
+
Thr
GGT
[ENA]
¢þ
>WENV183400794
OLZS01003277
[OLZS] human gut metagenome; feces
83
154
+
Gln
TTG
[ENA]
¢þ
>WENV183400811
OLZS01008337
[OLZS] human gut metagenome; feces
98
174
+
Arg
TCT
[ENA]
¢þ
>WENV183400789
OLZS01001934
[OLZS] human gut metagenome; feces
107
34
-
Thr
CGT
[ENA]
¢þ
>WENV183400808
OLZS01007983
[OLZS] human gut metagenome; feces
113
187
+
Val
TAC
[ENA]
¢þ
>WENV183400820
OLZS01009369
[OLZS] human gut metagenome; feces
135
210
+
Phe
GAA
[ENA]
¢þ
>WENV183400804
OLZS01005806
[OLZS] human gut metagenome; feces
152
223
+
Gln
TTG
[ENA]
¢þ
>WENV183400795
OLZS01003277
[OLZS] human gut metagenome; feces
159
231
+
Glu
TTC
[ENA]
¢þ
>WENV183400778
OLZS01000658
[OLZS] human gut metagenome; feces
166
91
-
Val
TAC
[ENA]
¢þ
>WENV183400815
OLZS01008689
[OLZS] human gut metagenome; feces
171
96
-
Lys
CTT
[ENA]
¢þ
>WENV183400812
OLZS01008337
[OLZS] human gut metagenome; feces
180
256
+
His
GTG
[ENA]
¢þ
>WENV183400759
OLZS01000330
[OLZS] human gut metagenome; feces
195
268
+
Gly
CCC
[ENA]
¢þ
>WENV183400809
OLZS01007983
[OLZS] human gut metagenome; feces
207
283
+
Met
CAT
[ENA]
¢þ
>WENV183400779
OLZS01000819
[OLZS] human gut metagenome; feces
213
142
-
Gln
CTG
[ENA]
¢þ
>WENV183400768
OLZS01000522
[OLZS] human gut metagenome; feces
248
166
-
Leu
TAG
[ENA]
¢þ
>WENV183400806
OLZS01006715
[OLZS] human gut metagenome; feces
257
331
+
Ala
GGC
[ENA]
¢þ
>WENV183400818
OLZS01008994
[OLZS] human gut metagenome; feces
286
200
-
Leu
TAA
[ENA]
¢þ
>WENV183400810
OLZS01007983
[OLZS] human gut metagenome; feces
287
361
+
Glu
TTC
[ENA]
¢þ
>WENV183400816
OLZS01008816
[OLZS] human gut metagenome; feces
309
221
-
Ser
CGA
[ENA]
¢þ
>WENV183400813
OLZS01008337
[OLZS] human gut metagenome; feces
313
387
+
Gln
TTG
[ENA]
¢þ
>WENV183400821
OLZS01009369
[OLZS] human gut metagenome; feces
328
402
+
Cys
GCA
[ENA]
¢þ
>WENV183400823
OLZS01009458
[OLZS] human gut metagenome; feces
332
247
-
Tyr
GTA
[ENA]
¢þ
>WENV183400817
OLZS01008994
[OLZS] human gut metagenome; feces
388
475
+
Leu
CAG
[ENA]
¢þ
>WENV183400784
OLZS01001236
[OLZS] human gut metagenome; feces
393
319
-
Val
GAC
[ENA]
¢þ
>WENV183400796
OLZS01003277
[OLZS] human gut metagenome; feces
395
477
+
Tyr
GTA
[ENA]
¢þ
>WENV183400814
OLZS01008337
[OLZS] human gut metagenome; feces
416
489
+
Lys
TTT
[ENA]
¢þ
>WENV183400822
OLZS01009458
[OLZS] human gut metagenome; feces
427
352
-
Thr
TGT
[ENA]
¢þ
>WENV183400798
OLZS01004062
[OLZS] human gut metagenome; feces
457
369
-
Ser
GGA
[ENA]
¢þ
>WENV183400797
OLZS01003290
[OLZS] human gut metagenome; feces
457
372
-
Ser
TGA
[ENA]
¢þ
>WENV183400803
OLZS01005011
[OLZS] human gut metagenome; feces
531
605
+
Arg
TCT
[ENA]
¢þ
>WENV183400805
OLZS01006211
[OLZS] human gut metagenome; feces
624
552
-
Arg
CCT
[ENA]
¢þ
>WENV183400769
OLZS01000535
[OLZS] human gut metagenome; feces
624
698
+
Ala
GGC
[ENA]
¢þ
>WENV183400801
OLZS01004169
[OLZS] human gut metagenome; feces
693
777
+
Leu
CAA
[ENA]
¢þ
>WENV183400802
OLZS01004874
[OLZS] human gut metagenome; feces
696
608
-
Ser
GGA
[ENA]
¢þ
>WENV183400719
OLZS01000016
[OLZS] human gut metagenome; feces
696
781
+
Leu
AAG
[ENA]
¢þ
>WENV183400764
OLZS01000416
[OLZS] human gut metagenome; feces
733
805
+
Arg
CCG
[ENA]
¢þ
>WENV183400783
OLZS01001113
[OLZS] human gut metagenome; feces
769
842
+
Gly
GCC
[ENA]
¢þ
>WENV183400767
OLZS01000510
[OLZS] human gut metagenome; feces
774
850
+
Arg
ACG
[ENA]
¢þ
>WENV183400800
OLZS01004108
[OLZS] human gut metagenome; feces
778
851
+
Lys
CTT
[ENA]
¢þ
>WENV183400781
OLZS01000907
[OLZS] human gut metagenome; feces
869
943
+
Pro
GGG
[ENA]
¢þ
>WENV183400786
OLZS01001436
[OLZS] human gut metagenome; feces
903
829
-
Asp
GTC
[ENA]
¢þ
>WENV183400780
OLZS01000842
[OLZS] human gut metagenome; feces
962
888
-
His
GTG
[ENA]
¢þ
>WENV183400787
OLZS01001811
[OLZS] human gut metagenome; feces
1002
929
-
Trp
CCA
[ENA]
¢þ
>WENV183400792
OLZS01003217
[OLZS] human gut metagenome; feces
1033
949
-
Leu
TAA
[ENA]
¢þ
>WENV183400791
OLZS01002625
[OLZS] human gut metagenome; feces
1034
960
-
Met
CAT
[ENA]
¢þ
>WENV183400788
OLZS01001918
[OLZS] human gut metagenome; feces
1060
1132
+
Glu
TTC
[ENA]
¢þ
>WENV183400754
OLZS01000274
[OLZS] human gut metagenome; feces
1076
1002
-
Val
TAC
[ENA]
¢þ
>WENV183400752
OLZS01000217
[OLZS] human gut metagenome; feces
1104
1179
+
Phe
GAA
[ENA]
¢þ
>WENV183400735
OLZS01000066
[OLZS] human gut metagenome; feces
1128
1213
+
Tyr
GTA
[ENA]
¢þ
>WENV183400776
OLZS01000619
[OLZS] human gut metagenome; feces
1265
1191
-
Asn
GTT
[ENA]
¢þ
>WENV183400753
OLZS01000259
[OLZS] human gut metagenome; feces
1336
1261
-
Ala
GGC
[ENA]
¢þ
>WENV183400790
OLZS01002136
[OLZS] human gut metagenome; feces
1355
1282
-
Lys
CTT
[ENA]
¢þ
>WENV183400743
OLZS01000085
[OLZS] human gut metagenome; feces
1423
1347
-
fMet
CAT
[ENA]
¢þ
>WENV183400751
OLZS01000203
[OLZS] human gut metagenome; feces
1473
1399
-
Ile2
CAT
[ENA]
¢þ
>WENV183400785
OLZS01001388
[OLZS] human gut metagenome; feces
1478
1393
-
Ser
TGA
[ENA]
¢þ
>WENV183400771
OLZS01000556
[OLZS] human gut metagenome; feces
1665
1739
+
Ile
GAT
[ENA]
¢þ
>WENV183400740
OLZS01000081
[OLZS] human gut metagenome; feces
1712
1786
+
His
GTG
[ENA]
¢þ
>WENV183400772
OLZS01000556
[OLZS] human gut metagenome; feces
1756
1830
+
Ala
TGC
[ENA]
¢þ
>WENV183400774
OLZS01000582
[OLZS] human gut metagenome; feces
1978
1905
-
Gly
CCC
[ENA]
¢þ
>WENV183400745
OLZS01000108
[OLZS] human gut metagenome; feces
2049
1975
-
Met
CAT
[ENA]
¢þ
>WENV183400761
OLZS01000349
[OLZS] human gut metagenome; feces
2120
2195
+
Ala
TGC
[ENA]
¢þ
>WENV183400773
OLZS01000582
[OLZS] human gut metagenome; feces
2122
2195
+
Gly
TCC
[ENA]
¢þ
>WENV183400777
OLZS01000640
[OLZS] human gut metagenome; feces
2131
2060
-
Gln
TTG
[ENA]
¢þ
>WENV183400782
OLZS01000923
[OLZS] human gut metagenome; feces
2178
2249
+
Gln
CTG
[ENA]
¢þ
>WENV183400762
OLZS01000349
[OLZS] human gut metagenome; feces
2277
2353
+
Ile
GAT
[ENA]
¢þ
>WENV183400766
OLZS01000458
[OLZS] human gut metagenome; feces
2394
2469
+
Lys
TTT
[ENA]
¢þ
>WENV183400760
OLZS01000340
[OLZS] human gut metagenome; feces
2443
2368
-
His
GTG
[ENA]
¢þ
>WENV183400758
OLZS01000305
[OLZS] human gut metagenome; feces
2444
2521
+
Asp
GTC
[ENA]
¢þ
>WENV183400765
OLZS01000447
[OLZS] human gut metagenome; feces
2478
2552
+
Gln
CTG
[ENA]
¢þ
>WENV183400775
OLZS01000611
[OLZS] human gut metagenome; feces
2499
2426
-
fMet
CAT
[ENA]
¢þ
>WENV183400725
OLZS01000031
[OLZS] human gut metagenome; feces
2686
2773
+
Ser
TGA
[ENA]
¢þ
>WENV183400763
OLZS01000407
[OLZS] human gut metagenome; feces
2887
2962
+
Ala
CGC
[ENA]
¢þ
>WENV183400770
OLZS01000547
[OLZS] human gut metagenome; feces
3335
3250
-
Leu
TAA
[ENA]
¢þ
>WENV183400755
OLZS01000275
[OLZS] human gut metagenome; feces
3388
3462
+
Cys
GCA
[ENA]
¢þ
>WENV183400744
OLZS01000106
[OLZS] human gut metagenome; feces
3395
3469
+
Gly
GCC
[ENA]
¢þ
>WENV183400737
OLZS01000076
[OLZS] human gut metagenome; feces
3714
3797
+
Leu
TAA
[ENA]
¢þ
>WENV183400727
OLZS01000040
[OLZS] human gut metagenome; feces
3845
3773
-
Cys
GCA
[ENA]
¢þ
>WENV183400750
OLZS01000169
[OLZS] human gut metagenome; feces
3898
3972
+
Gln
TTG
[ENA]
¢þ
>WENV183400749
OLZS01000154
[OLZS] human gut metagenome; feces
3901
3977
+
Pro
CGG
[ENA]
¢þ
>WENV183400741
OLZS01000081
[OLZS] human gut metagenome; feces
4139
4214
+
Ile2
CAT
[ENA]
¢þ
>WENV183400756
OLZS01000275
[OLZS] human gut metagenome; feces
4142
4229
+
Ser
GCT
[ENA]
¢þ
>WENV183400757
OLZS01000275
[OLZS] human gut metagenome; feces
4583
4657
+
Glu
CTC
[ENA]
¢þ
>WENV183400739
OLZS01000078
[OLZS] human gut metagenome; feces
5200
5126
-
Thr
TGT
[ENA]
¢þ
>WENV183400723
OLZS01000024
[OLZS] human gut metagenome; feces
5201
5126
-
Glu
TTC
[ENA]
¢þ
>WENV183400734
OLZS01000065
[OLZS] human gut metagenome; feces
6025
6099
+
Val
CAC
[ENA]
¢þ
>WENV183400747
OLZS01000132
[OLZS] human gut metagenome; feces
6303
6377
+
Thr
GGT
[ENA]
¢þ
>WENV183400742
OLZS01000084
[OLZS] human gut metagenome; feces
6412
6328
-
Leu
TAG
[ENA]
¢þ
>WENV183400738
OLZS01000076
[OLZS] human gut metagenome; feces
6876
6951
+
Glu
CTC
[ENA]
¢þ
>WENV183400748
OLZS01000132
[OLZS] human gut metagenome; feces
7700
7775
+
Trp
CCA
[ENA]
¢þ
>WENV183400746
OLZS01000110
[OLZS] human gut metagenome; feces
8725
8800
+
Lys
TTT
[ENA]
¢þ
>WENV183400733
OLZS01000055
[OLZS] human gut metagenome; feces
9616
9690
+
Arg
CCG
[ENA]
¢þ
>WENV183400736
OLZS01000067
[OLZS] human gut metagenome; feces
12418
12510
+
Ser
CGA
[ENA]
¢þ
>WENV183400731
OLZS01000054
[OLZS] human gut metagenome; feces
13193
13268
+
Phe
GAA
[ENA]
¢þ
>WENV183400732
OLZS01000054
[OLZS] human gut metagenome; feces
13304
13380
+
Pro
TGG
[ENA]
¢þ
>WENV183400728
OLZS01000048
[OLZS] human gut metagenome; feces
13424
13350
-
Asn
GTT
[ENA]
¢þ
>WENV183400715
OLZS01000003
[OLZS] human gut metagenome; feces
13785
13874
+
Ser
GGA
[ENA]
¢þ
>WENV183400729
OLZS01000053
[OLZS] human gut metagenome; feces
14055
14129
+
Thr
CGT
[ENA]
¢þ
>WENV183400730
OLZS01000053
[OLZS] human gut metagenome; feces
14172
14247
+
Lys
CTT
[ENA]
¢þ
>WENV183400724
OLZS01000028
[OLZS] human gut metagenome; feces
14776
14852
+
Arg
TCT
[ENA]
¢þ
>WENV183400726
OLZS01000032
[OLZS] human gut metagenome; feces
15996
15920
-
Pro
GGG
[ENA]
¢þ
>WENV183400717
OLZS01000005
[OLZS] human gut metagenome; feces
16806
16724
-
Leu
CAA
[ENA]
¢þ
>WENV183400720
OLZS01000016
[OLZS] human gut metagenome; feces
16964
17038
+
Cys
GCA
[ENA]
¢þ
>WENV183400722
OLZS01000022
[OLZS] human gut metagenome; feces
18457
18365
-
Ser
GCT
[ENA]
¢þ
>WENV183400721
OLZS01000016
[OLZS] human gut metagenome; feces
19886
19961
+
Glu
TTC
[ENA]
¢þ
>WENV183400718
OLZS01000010
[OLZS] human gut metagenome; feces
22852
22926
+
Arg
CCT
[ENA]
¢þ
>WENV183400716
OLZS01000004
[OLZS] human gut metagenome; feces
26057
26143
+
Leu
CAG
[ENA]
¢þ
>WENV183400714
OLZS01000001
[OLZS] human gut metagenome; feces
45920
45992
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK