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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OLZX] human gut metagenome; feces
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183404709
OLZX01001679
[OLZX] human gut metagenome; feces
6
92
+
Leu
TAA
[ENA]
¢þ
>WENV183404691
OLZX01000548
[OLZX] human gut metagenome; feces
10
83
+
Phe
GAA
[ENA]
¢þ
>WENV183404708
OLZX01001665
[OLZX] human gut metagenome; feces
51
127
+
Pro
GGG
[ENA]
¢þ
>WENV183404707
OLZX01001615
[OLZX] human gut metagenome; feces
105
30
-
Ala
TGC
[ENA]
¢þ
>WENV183404692
OLZX01000626
[OLZX] human gut metagenome; feces
123
198
+
Pro
GGG
[ENA]
¢þ
>WENV183404702
OLZX01001056
[OLZX] human gut metagenome; feces
138
67
-
Gln
CTG
[ENA]
¢þ
>WENV183404697
OLZX01000903
[OLZX] human gut metagenome; feces
295
368
+
Lys
TTT
[ENA]
¢þ
>WENV183404696
OLZX01000807
[OLZX] human gut metagenome; feces
310
235
-
His
GTG
[ENA]
¢þ
>WENV183404706
OLZX01001520
[OLZX] human gut metagenome; feces
329
405
+
Arg
ACG
[ENA]
¢þ
>WENV183404687
OLZX01000431
[OLZX] human gut metagenome; feces
341
413
+
Gly
CCC
[ENA]
¢þ
>WENV183404676
OLZX01000120
[OLZX] human gut metagenome; feces
355
427
+
Arg
CCT
[ENA]
¢þ
>WENV183404710
OLZX01001909
[OLZX] human gut metagenome; feces
373
284
-
Ser
CGA
[ENA]
¢þ
>WENV183404699
OLZX01000904
[OLZX] human gut metagenome; feces
449
375
-
Ala
TGC
[ENA]
¢þ
>WENV183404698
OLZX01000904
[OLZX] human gut metagenome; feces
533
459
-
Ile
GAT
[ENA]
¢þ
>WENV183404704
OLZX01001223
[OLZX] human gut metagenome; feces
758
832
+
Asn
GTT
[ENA]
¢þ
>WENV183404684
OLZX01000268
[OLZX] human gut metagenome; feces
760
846
+
Ser
TGA
[ENA]
¢þ
>WENV183404703
OLZX01001064
[OLZX] human gut metagenome; feces
827
902
+
fMet
CAT
[ENA]
¢þ
>WENV183404700
OLZX01000909
[OLZX] human gut metagenome; feces
891
965
+
Met
CAT
[ENA]
¢þ
>WENV183404705
OLZX01001223
[OLZX] human gut metagenome; feces
967
1044
+
Val
TAC
[ENA]
¢þ
>WENV183404701
OLZX01000978
[OLZX] human gut metagenome; feces
1275
1201
-
Ala
GGC
[ENA]
¢þ
>WENV183404672
OLZX01000023
[OLZX] human gut metagenome; feces
1307
1233
-
Ile2
CAT
[ENA]
¢þ
>WENV183404693
OLZX01000762
[OLZX] human gut metagenome; feces
1359
1273
-
Leu
GAG
[ENA]
¢þ
>WENV183404694
OLZX01000788
[OLZX] human gut metagenome; feces
1405
1477
+
Glu
CTC
[ENA]
¢þ
>WENV183404681
OLZX01000204
[OLZX] human gut metagenome; feces
1419
1502
+
Leu
TAG
[ENA]
¢þ
>WENV183404695
OLZX01000794
[OLZX] human gut metagenome; feces
1539
1465
-
Gly
GCC
[ENA]
¢þ
>WENV183404686
OLZX01000403
[OLZX] human gut metagenome; feces
1550
1621
+
Gln
TTG
[ENA]
¢þ
>WENV183404690
OLZX01000496
[OLZX] human gut metagenome; feces
1576
1649
+
Thr
CGT
[ENA]
¢þ
>WENV183404688
OLZX01000463
[OLZX] human gut metagenome; feces
1628
1541
-
Ser
CGA
[ENA]
¢þ
>WENV183404685
OLZX01000277
[OLZX] human gut metagenome; feces
1725
1653
-
Glu
TTC
[ENA]
¢þ
>WENV183404678
OLZX01000160
[OLZX] human gut metagenome; feces
2046
1974
-
Gln
TTG
[ENA]
¢þ
>WENV183404682
OLZX01000233
[OLZX] human gut metagenome; feces
2225
2309
+
Leu
CAG
[ENA]
¢þ
>WENV183404689
OLZX01000485
[OLZX] human gut metagenome; feces
2383
2306
-
Arg
TCT
[ENA]
¢þ
>WENV183404677
OLZX01000160
[OLZX] human gut metagenome; feces
2454
2369
-
Ser
ACT
[ENA]
¢þ
>WENV183404680
OLZX01000181
[OLZX] human gut metagenome; feces
2702
2773
+
Cys
GCA
[ENA]
¢þ
>WENV183404675
OLZX01000096
[OLZX] human gut metagenome; feces
3163
3235
+
Arg
CCG
[ENA]
¢þ
>WENV183404683
OLZX01000261
[OLZX] human gut metagenome; feces
3291
3216
-
Pro
CGG
[ENA]
¢þ
>WENV183404679
OLZX01000172
[OLZX] human gut metagenome; feces
3374
3302
-
Thr
GGT
[ENA]
¢þ
>WENV183404669
OLZX01000023
[OLZX] human gut metagenome; feces
5148
5222
+
Thr
TGT
[ENA]
¢þ
>WENV183404674
OLZX01000084
[OLZX] human gut metagenome; feces
5153
5241
+
Ser
GGA
[ENA]
¢þ
>WENV183404670
OLZX01000023
[OLZX] human gut metagenome; feces
5339
5422
+
Tyr
GTA
[ENA]
¢þ
>WENV183404673
OLZX01000028
[OLZX] human gut metagenome; feces
6538
6614
+
Asp
GTC
[ENA]
¢þ
>WENV183404671
OLZX01000023
[OLZX] human gut metagenome; feces
6957
7030
+
Trp
CCA
[ENA]
¢þ
>WENV183404668
OLZX01000002
[OLZX] human gut metagenome; feces
11513
11597
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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