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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OMBH] human gut metagenome; feces
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183424525
OMBH01000554
[OMBH] human gut metagenome; feces
28
102
+
Glu
CTC
[ENA]
¢þ
>WENV183424527
OMBH01000792
[OMBH] human gut metagenome; feces
75
148
+
Trp
CCA
[ENA]
¢þ
>WENV183424519
OMBH01000104
[OMBH] human gut metagenome; feces
116
201
+
Ser
TGA
[ENA]
¢þ
>WENV183424534
OMBH01001278
[OMBH] human gut metagenome; feces
170
244
+
Met
CAT
[ENA]
¢þ
>WENV183424531
OMBH01001040
[OMBH] human gut metagenome; feces
199
124
-
Gly
GCC
[ENA]
¢þ
>WENV183424522
OMBH01000421
[OMBH] human gut metagenome; feces
200
274
+
His
GTG
[ENA]
¢þ
>WENV183424518
OMBH01000047
[OMBH] human gut metagenome; feces
235
310
+
Pro
TGG
[ENA]
¢þ
>WENV183424532
OMBH01001161
[OMBH] human gut metagenome; feces
249
177
-
Arg
CCT
[ENA]
¢þ
>WENV183424523
OMBH01000477
[OMBH] human gut metagenome; feces
291
373
+
Leu
TAG
[ENA]
¢þ
>WENV183424529
OMBH01000974
[OMBH] human gut metagenome; feces
301
375
+
Ala
GGC
[ENA]
¢þ
>WENV183424530
OMBH01001040
[OMBH] human gut metagenome; feces
302
227
-
Phe
GAA
[ENA]
¢þ
>WENV183424521
OMBH01000266
[OMBH] human gut metagenome; feces
312
385
+
Lys
TTT
[ENA]
¢þ
>WENV183424526
OMBH01000554
[OMBH] human gut metagenome; feces
326
399
+
Lys
CTT
[ENA]
¢þ
>WENV183424535
OMBH01001444
[OMBH] human gut metagenome; feces
354
270
-
Leu
GAG
[ENA]
¢þ
>WENV183424537
OMBH01001826
[OMBH] human gut metagenome; feces
399
473
+
Thr
TGT
[ENA]
¢þ
>WENV183424533
OMBH01001228
[OMBH] human gut metagenome; feces
460
548
+
Ser
GGA
[ENA]
¢þ
>WENV183424536
OMBH01001694
[OMBH] human gut metagenome; feces
496
412
-
Leu
TAA
[ENA]
¢þ
>WENV183424520
OMBH01000218
[OMBH] human gut metagenome; feces
540
613
+
fMet
CAT
[ENA]
¢þ
>WENV183424524
OMBH01000553
[OMBH] human gut metagenome; feces
577
503
-
Ile2
CAT
[ENA]
¢þ
>WENV183424528
OMBH01000906
[OMBH] human gut metagenome; feces
635
563
-
Thr
GGT
[ENA]
¢þ
>WENV183424516
OMBH01000007
[OMBH] human gut metagenome; feces
2237
2311
+
Ile
GAT
[ENA]
¢þ
>WENV183424517
OMBH01000007
[OMBH] human gut metagenome; feces
2328
2402
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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