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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OMBS] human gut metagenome; feces
HIT:
86 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183432926
OMBS01004662
[OMBS] human gut metagenome; feces
1
77
+
Asp
GTC
[ENA]
¢þ
>WENV183432942
OMBS01007486
[OMBS] human gut metagenome; feces
9
84
+
Ala
TGC
[ENA]
¢þ
>WENV183432948
OMBS01008076
[OMBS] human gut metagenome; feces
17
90
+
Ile2
CAT
[ENA]
¢þ
>WENV183432914
OMBS01002512
[OMBS] human gut metagenome; feces
22
96
+
Gln
CTG
[ENA]
¢þ
>WENV183432890
OMBS01000956
[OMBS] human gut metagenome; feces
64
139
+
Ala
GGC
[ENA]
¢þ
>WENV183432913
OMBS01002440
[OMBS] human gut metagenome; feces
83
7
-
Val
GAC
[ENA]
¢þ
>WENV183432915
OMBS01002722
[OMBS] human gut metagenome; feces
84
157
+
Gln
CTG
[ENA]
¢þ
>WENV183432927
OMBS01004662
[OMBS] human gut metagenome; feces
86
161
+
Trp
CCA
[ENA]
¢þ
>WENV183432949
OMBS01008076
[OMBS] human gut metagenome; feces
105
180
+
Asp
GTC
[ENA]
¢þ
>WENV183432908
OMBS01001937
[OMBS] human gut metagenome; feces
108
33
-
Ala
CGC
[ENA]
¢þ
>WENV183432938
OMBS01006553
[OMBS] human gut metagenome; feces
110
39
-
Cys
GCA
[ENA]
¢þ
>WENV183432907
OMBS01001865
[OMBS] human gut metagenome; feces
140
64
-
Arg
TCT
[ENA]
¢þ
>WENV183432945
OMBS01007744
[OMBS] human gut metagenome; feces
148
73
-
Arg
CCG
[ENA]
¢þ
>WENV183432946
OMBS01007835
[OMBS] human gut metagenome; feces
162
89
-
Lys
TTT
[ENA]
¢þ
>WENV183432950
OMBS01008076
[OMBS] human gut metagenome; feces
188
263
+
Val
TAC
[ENA]
¢þ
>WENV183432947
OMBS01008023
[OMBS] human gut metagenome; feces
191
278
+
Ser
TGA
[ENA]
¢þ
>WENV183432941
OMBS01007353
[OMBS] human gut metagenome; feces
205
280
+
Trp
CCA
[ENA]
¢þ
>WENV183432937
OMBS01006553
[OMBS] human gut metagenome; feces
213
140
-
Gly
GCC
[ENA]
¢þ
>WENV183432925
OMBS01004271
[OMBS] human gut metagenome; feces
225
138
-
Leu
CAG
[ENA]
¢þ
>WENV183432929
OMBS01005045
[OMBS] human gut metagenome; feces
235
310
+
Ala
GGC
[ENA]
¢þ
>WENV183432916
OMBS01002963
[OMBS] human gut metagenome; feces
255
171
-
Leu
CAA
[ENA]
¢þ
>WENV183432935
OMBS01006271
[OMBS] human gut metagenome; feces
261
334
+
Phe
GAA
[ENA]
¢þ
>WENV183432951
OMBS01008076
[OMBS] human gut metagenome; feces
269
345
+
Asp
GTC
[ENA]
¢þ
>WENV183432943
OMBS01007486
[OMBS] human gut metagenome; feces
279
355
+
Ile
GAT
[ENA]
¢þ
>WENV183432923
OMBS01004099
[OMBS] human gut metagenome; feces
280
194
-
Leu
GAG
[ENA]
¢þ
>WENV183432952
OMBS01008076
[OMBS] human gut metagenome; feces
349
424
+
Thr
GGT
[ENA]
¢þ
>WENV183432924
OMBS01004271
[OMBS] human gut metagenome; feces
350
264
-
Leu
GAG
[ENA]
¢þ
>WENV183432940
OMBS01006726
[OMBS] human gut metagenome; feces
350
277
-
Gly
CCC
[ENA]
¢þ
>WENV183432932
OMBS01005551
[OMBS] human gut metagenome; feces
375
302
-
Lys
TTT
[ENA]
¢þ
>WENV183432936
OMBS01006455
[OMBS] human gut metagenome; feces
377
453
+
Asp
GTC
[ENA]
¢þ
>WENV183432906
OMBS01001732
[OMBS] human gut metagenome; feces
383
458
+
Asn
GTT
[ENA]
¢þ
>WENV183432904
OMBS01001578
[OMBS] human gut metagenome; feces
411
340
-
Gln
CTG
[ENA]
¢þ
>WENV183432922
OMBS01003720
[OMBS] human gut metagenome; feces
418
502
+
Leu
CAA
[ENA]
¢þ
>WENV183432944
OMBS01007486
[OMBS] human gut metagenome; feces
459
534
+
Ala
TGC
[ENA]
¢þ
>WENV183432912
OMBS01002426
[OMBS] human gut metagenome; feces
474
398
-
Pro
GGG
[ENA]
¢þ
>WENV183432903
OMBS01001551
[OMBS] human gut metagenome; feces
488
413
-
Phe
GAA
[ENA]
¢þ
>WENV183432939
OMBS01006694
[OMBS] human gut metagenome; feces
490
405
-
Leu
CAA
[ENA]
¢þ
>WENV183432931
OMBS01005367
[OMBS] human gut metagenome; feces
512
424
-
Leu
GAG
[ENA]
¢þ
>WENV183432921
OMBS01003719
[OMBS] human gut metagenome; feces
536
445
-
Ser
GGA
[ENA]
¢þ
>WENV183432930
OMBS01005218
[OMBS] human gut metagenome; feces
539
465
-
Ala
TGC
[ENA]
¢þ
>WENV183432933
OMBS01005904
[OMBS] human gut metagenome; feces
547
621
+
Val
TAC
[ENA]
¢þ
>WENV183432934
OMBS01005909
[OMBS] human gut metagenome; feces
548
623
+
Ile2
CAT
[ENA]
¢þ
>WENV183432928
OMBS01004709
[OMBS] human gut metagenome; feces
561
650
+
Ser
CGA
[ENA]
¢þ
>WENV183432891
OMBS01000974
[OMBS] human gut metagenome; feces
562
637
+
Val
TAC
[ENA]
¢þ
>WENV183432905
OMBS01001584
[OMBS] human gut metagenome; feces
594
669
+
Gly
GCC
[ENA]
¢þ
>WENV183432881
OMBS01000455
[OMBS] human gut metagenome; feces
610
685
+
Ile2
CAT
[ENA]
¢þ
>WENV183432893
OMBS01001016
[OMBS] human gut metagenome; feces
624
700
+
Arg
CCG
[ENA]
¢þ
>WENV183432899
OMBS01001402
[OMBS] human gut metagenome; feces
642
558
-
Tyr
GTA
[ENA]
¢þ
>WENV183432892
OMBS01000974
[OMBS] human gut metagenome; feces
642
717
+
Lys
TTT
[ENA]
¢þ
>WENV183432897
OMBS01001265
[OMBS] human gut metagenome; feces
645
732
+
Ser
GGA
[ENA]
¢þ
>WENV183432917
OMBS01003096
[OMBS] human gut metagenome; feces
651
738
+
Ser
GCT
[ENA]
¢þ
>WENV183432902
OMBS01001519
[OMBS] human gut metagenome; feces
727
653
-
Gln
TTG
[ENA]
¢þ
>WENV183432894
OMBS01001016
[OMBS] human gut metagenome; feces
759
834
+
His
GTG
[ENA]
¢þ
>WENV183432882
OMBS01000455
[OMBS] human gut metagenome; feces
766
841
+
Thr
TGT
[ENA]
¢þ
>WENV183432920
OMBS01003326
[OMBS] human gut metagenome; feces
778
706
-
Arg
CCT
[ENA]
¢þ
>WENV183432898
OMBS01001383
[OMBS] human gut metagenome; feces
795
722
-
Gly
CCC
[ENA]
¢þ
>WENV183432900
OMBS01001440
[OMBS] human gut metagenome; feces
840
916
+
fMet
CAT
[ENA]
¢þ
>WENV183432883
OMBS01000455
[OMBS] human gut metagenome; feces
845
919
+
Gly
TCC
[ENA]
¢þ
>WENV183432919
OMBS01003109
[OMBS] human gut metagenome; feces
849
773
-
Ile
GAT
[ENA]
¢þ
>WENV183432895
OMBS01001016
[OMBS] human gut metagenome; feces
855
941
+
Leu
CAG
[ENA]
¢þ
>WENV183432873
OMBS01000169
[OMBS] human gut metagenome; feces
862
788
-
Glu
CTC
[ENA]
¢þ
>WENV183432876
OMBS01000346
[OMBS] human gut metagenome; feces
862
938
+
Met
CAT
[ENA]
¢þ
>WENV183432911
OMBS01002220
[OMBS] human gut metagenome; feces
884
959
+
Ile2
CAT
[ENA]
¢þ
>WENV183432901
OMBS01001456
[OMBS] human gut metagenome; feces
920
1004
+
Leu
TAG
[ENA]
¢þ
>WENV183432878
OMBS01000358
[OMBS] human gut metagenome; feces
923
848
-
Pro
TGG
[ENA]
¢þ
>WENV183432884
OMBS01000455
[OMBS] human gut metagenome; feces
926
1001
+
Thr
GGT
[ENA]
¢þ
>WENV183432918
OMBS01003109
[OMBS] human gut metagenome; feces
928
853
-
Ala
TGC
[ENA]
¢þ
>WENV183432872
OMBS01000169
[OMBS] human gut metagenome; feces
983
908
-
Lys
CTT
[ENA]
¢þ
>WENV183432910
OMBS01001984
[OMBS] human gut metagenome; feces
983
909
-
Ala
TGC
[ENA]
¢þ
>WENV183432877
OMBS01000346
[OMBS] human gut metagenome; feces
987
1061
+
Gln
CTG
[ENA]
¢þ
>WENV183432880
OMBS01000380
[OMBS] human gut metagenome; feces
1058
983
-
fMet
CAT
[ENA]
¢þ
>WENV183432909
OMBS01001984
[OMBS] human gut metagenome; feces
1072
998
-
Ile
GAT
[ENA]
¢þ
>WENV183432896
OMBS01001251
[OMBS] human gut metagenome; feces
1090
1184
+
SeC
TCA
[ENA]
¢þ
>WENV183432879
OMBS01000380
[OMBS] human gut metagenome; feces
1163
1078
-
Leu
TAA
[ENA]
¢þ
>WENV183432885
OMBS01000627
[OMBS] human gut metagenome; feces
1411
1485
+
Gly
TCC
[ENA]
¢þ
>WENV183432886
OMBS01000627
[OMBS] human gut metagenome; feces
1495
1571
+
Arg
TCT
[ENA]
¢þ
>WENV183432887
OMBS01000627
[OMBS] human gut metagenome; feces
1619
1695
+
His
GTG
[ENA]
¢þ
>WENV183432888
OMBS01000627
[OMBS] human gut metagenome; feces
1747
1821
+
Gln
TTG
[ENA]
¢þ
>WENV183432867
OMBS01000077
[OMBS] human gut metagenome; feces
1781
1856
+
Thr
TGT
[ENA]
¢þ
>WENV183432889
OMBS01000627
[OMBS] human gut metagenome; feces
1863
1938
+
Lys
TTT
[ENA]
¢þ
>WENV183432868
OMBS01000077
[OMBS] human gut metagenome; feces
1869
1953
+
Tyr
GTA
[ENA]
¢þ
>WENV183432875
OMBS01000237
[OMBS] human gut metagenome; feces
2061
1985
-
Ile
GAT
[ENA]
¢þ
>WENV183432874
OMBS01000237
[OMBS] human gut metagenome; feces
2160
2085
-
Ala
TGC
[ENA]
¢þ
>WENV183432870
OMBS01000164
[OMBS] human gut metagenome; feces
2386
2460
+
Asn
GTT
[ENA]
¢þ
>WENV183432871
OMBS01000164
[OMBS] human gut metagenome; feces
2463
2538
+
Thr
TGT
[ENA]
¢þ
>WENV183432869
OMBS01000087
[OMBS] human gut metagenome; feces
2611
2686
+
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK