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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OMCV] human gut metagenome; feces
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183450038
OMCV01000928
[OMCV] human gut metagenome; feces
286
357
+
Gln
TTG
[ENA]
¢þ
>WENV183450036
OMCV01000265
[OMCV] human gut metagenome; feces
352
427
+
Phe
GAA
[ENA]
¢þ
>WENV183450037
OMCV01000438
[OMCV] human gut metagenome; feces
430
356
-
Cys
GCA
[ENA]
¢þ
>WENV183450035
OMCV01000201
[OMCV] human gut metagenome; feces
638
715
+
Val
TAC
[ENA]
¢þ
>WENV183450034
OMCV01000057
[OMCV] human gut metagenome; feces
824
752
-
Thr
GGT
[ENA]
¢þ
>WENV183450033
OMCV01000057
[OMCV] human gut metagenome; feces
1023
940
-
Tyr
GTA
[ENA]
¢þ
>WENV183450032
OMCV01000008
[OMCV] human gut metagenome; feces
1191
1117
-
Ala
TGC
[ENA]
¢þ
>WENV183450031
OMCV01000008
[OMCV] human gut metagenome; feces
1282
1208
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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