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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OMDS] human gut metagenome; feces
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183461502
OMDS01000004
[OMDS] human gut metagenome; feces
99
26
-
Lys
TTT
[ENA]
¢þ
>WENV183461532
OMDS01000692
[OMDS] human gut metagenome; feces
114
38
-
Val
TAC
[ENA]
¢þ
>WENV183461542
OMDS01001723
[OMDS] human gut metagenome; feces
158
86
-
Gly
CCC
[ENA]
¢þ
>WENV183461536
OMDS01000922
[OMDS] human gut metagenome; feces
274
199
-
Pro
TGG
[ENA]
¢þ
>WENV183461531
OMDS01000692
[OMDS] human gut metagenome; feces
323
249
-
Asn
GTT
[ENA]
¢þ
>WENV183461535
OMDS01000922
[OMDS] human gut metagenome; feces
438
364
-
Ile2
CAT
[ENA]
¢þ
>WENV183461539
OMDS01001132
[OMDS] human gut metagenome; feces
441
366
-
Pro
CGG
[ENA]
¢þ
>WENV183461540
OMDS01001249
[OMDS] human gut metagenome; feces
539
613
+
Sup
CTA
[ENA]
¢þ
>WENV183461533
OMDS01000799
[OMDS] human gut metagenome; feces
559
488
-
Gln
CTG
[ENA]
¢þ
>WENV183461528
OMDS01000521
[OMDS] human gut metagenome; feces
562
490
-
Arg
CCT
[ENA]
¢þ
>WENV183461523
OMDS01000371
[OMDS] human gut metagenome; feces
570
643
+
Trp
CCA
[ENA]
¢þ
>WENV183461526
OMDS01000475
[OMDS] human gut metagenome; feces
601
673
+
Thr
GGT
[ENA]
¢þ
>WENV183461541
OMDS01001277
[OMDS] human gut metagenome; feces
696
621
-
Ala
GGC
[ENA]
¢þ
>WENV183461538
OMDS01000972
[OMDS] human gut metagenome; feces
763
689
-
Ile2
CAT
[ENA]
¢þ
>WENV183461519
OMDS01000208
[OMDS] human gut metagenome; feces
961
874
-
Ser
CGA
[ENA]
¢þ
>WENV183461537
OMDS01000967
[OMDS] human gut metagenome; feces
1023
1098
+
Pro
GGG
[ENA]
¢þ
>WENV183461530
OMDS01000674
[OMDS] human gut metagenome; feces
1091
1016
-
fMet
CAT
[ENA]
¢þ
>WENV183461534
OMDS01000886
[OMDS] human gut metagenome; feces
1217
1292
+
Asn
GTT
[ENA]
¢þ
>WENV183461527
OMDS01000487
[OMDS] human gut metagenome; feces
1512
1583
+
Gln
TTG
[ENA]
¢þ
>WENV183461515
OMDS01000198
[OMDS] human gut metagenome; feces
1740
1668
-
Glu
TTC
[ENA]
¢þ
>WENV183461509
OMDS01000140
[OMDS] human gut metagenome; feces
1796
1880
+
Leu
CAG
[ENA]
¢þ
>WENV183461529
OMDS01000614
[OMDS] human gut metagenome; feces
2088
2014
-
Ala
GGC
[ENA]
¢þ
>WENV183461517
OMDS01000201
[OMDS] human gut metagenome; feces
2245
2173
-
Gln
TTG
[ENA]
¢þ
>WENV183461524
OMDS01000426
[OMDS] human gut metagenome; feces
2557
2630
+
Gly
GCC
[ENA]
¢þ
>WENV183461516
OMDS01000201
[OMDS] human gut metagenome; feces
2653
2568
-
Ser
ACT
[ENA]
¢þ
>WENV183461525
OMDS01000428
[OMDS] human gut metagenome; feces
2724
2652
-
Glu
CTC
[ENA]
¢þ
>WENV183461520
OMDS01000228
[OMDS] human gut metagenome; feces
3373
3447
+
Thr
TGT
[ENA]
¢þ
>WENV183461522
OMDS01000306
[OMDS] human gut metagenome; feces
3541
3464
-
Arg
TCT
[ENA]
¢þ
>WENV183461521
OMDS01000228
[OMDS] human gut metagenome; feces
3564
3647
+
Tyr
GTA
[ENA]
¢þ
>WENV183461518
OMDS01000207
[OMDS] human gut metagenome; feces
3624
3699
+
His
GTG
[ENA]
¢þ
>WENV183461508
OMDS01000120
[OMDS] human gut metagenome; feces
3979
4062
+
Leu
TAG
[ENA]
¢þ
>WENV183461513
OMDS01000163
[OMDS] human gut metagenome; feces
3986
3912
-
Ala
TGC
[ENA]
¢þ
>WENV183461512
OMDS01000163
[OMDS] human gut metagenome; feces
4070
3996
-
Ile
GAT
[ENA]
¢þ
>WENV183461514
OMDS01000185
[OMDS] human gut metagenome; feces
4461
4534
+
Thr
CGT
[ENA]
¢þ
>WENV183461503
OMDS01000009
[OMDS] human gut metagenome; feces
4765
4692
-
Phe
GAA
[ENA]
¢þ
>WENV183461506
OMDS01000078
[OMDS] human gut metagenome; feces
4901
4973
+
Arg
CCG
[ENA]
¢þ
>WENV183461507
OMDS01000098
[OMDS] human gut metagenome; feces
5006
4920
-
Leu
TAA
[ENA]
¢þ
>WENV183461511
OMDS01000154
[OMDS] human gut metagenome; feces
5055
5131
+
Asp
GTC
[ENA]
¢þ
>WENV183461501
OMDS01000001
[OMDS] human gut metagenome; feces
5127
5198
+
Cys
GCA
[ENA]
¢þ
>WENV183461510
OMDS01000149
[OMDS] human gut metagenome; feces
5406
5479
+
Lys
CTT
[ENA]
¢þ
>WENV183461505
OMDS01000077
[OMDS] human gut metagenome; feces
6469
6381
-
Ser
GGA
[ENA]
¢þ
>WENV183461504
OMDS01000013
[OMDS] human gut metagenome; feces
8770
8684
-
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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