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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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HOW TO USE
tRNA gene List
[OMDT] human gut metagenome; feces
HIT:
146 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183461597
OMDT01001148
[OMDT] human gut metagenome; feces
6
80
+
His
GTG
[ENA]
¢þ
>WENV183461563
OMDT01000284
[OMDT] human gut metagenome; feces
8
80
+
Glu
CTC
[ENA]
¢þ
>WENV183461656
OMDT01011256
[OMDT] human gut metagenome; feces
12
88
+
Met
CAT
[ENA]
¢þ
>WENV183461642
OMDT01007410
[OMDT] human gut metagenome; feces
34
107
+
Gly
GCC
[ENA]
¢þ
>WENV183461659
OMDT01011392
[OMDT] human gut metagenome; feces
38
115
+
Lys
CTT
[ENA]
¢þ
>WENV183461670
OMDT01016175
[OMDT] human gut metagenome; feces
47
121
+
Pro
CGG
[ENA]
¢þ
>WENV183461621
OMDT01003328
[OMDT] human gut metagenome; feces
55
129
+
Thr
TGT
[ENA]
¢þ
>WENV183461649
OMDT01009180
[OMDT] human gut metagenome; feces
59
134
+
Thr
GGT
[ENA]
¢þ
>WENV183461594
OMDT01001051
[OMDT] human gut metagenome; feces
62
135
+
Gly
GCC
[ENA]
¢þ
>WENV183461687
OMDT01023875
[OMDT] human gut metagenome; feces
64
139
+
Val
GAC
[ENA]
¢þ
>WENV183461579
OMDT01000759
[OMDT] human gut metagenome; feces
78
167
+
Leu
GAG
[ENA]
¢þ
>WENV183461688
OMDT01025190
[OMDT] human gut metagenome; feces
79
153
+
Arg
ACG
[ENA]
¢þ
>WENV183461619
OMDT01003178
[OMDT] human gut metagenome; feces
84
10
-
Val
CAC
[ENA]
¢þ
>WENV183461595
OMDT01001059
[OMDT] human gut metagenome; feces
89
13
-
Thr
CGT
[ENA]
¢þ
>WENV183461608
OMDT01001915
[OMDT] human gut metagenome; feces
95
171
+
Ile2
CAT
[ENA]
¢þ
>WENV183461653
OMDT01010313
[OMDT] human gut metagenome; feces
101
184
+
Leu
TAA
[ENA]
¢þ
>WENV183461663
OMDT01013564
[OMDT] human gut metagenome; feces
110
186
+
His
GTG
[ENA]
¢þ
>WENV183461548
OMDT01000026
[OMDT] human gut metagenome; feces
115
39
-
Pro
GGG
[ENA]
¢þ
>WENV183461641
OMDT01006799
[OMDT] human gut metagenome; feces
115
40
-
Pro
TGG
[ENA]
¢þ
>WENV183461643
OMDT01007410
[OMDT] human gut metagenome; feces
115
199
+
Leu
TAA
[ENA]
¢þ
>WENV183461657
OMDT01011256
[OMDT] human gut metagenome; feces
125
199
+
Glu
TTC
[ENA]
¢þ
>WENV183461553
OMDT01000055
[OMDT] human gut metagenome; feces
140
67
-
Gly
TCC
[ENA]
¢þ
>WENV183461605
OMDT01001833
[OMDT] human gut metagenome; feces
142
217
+
Gly
GCC
[ENA]
¢þ
>WENV183461560
OMDT01000210
[OMDT] human gut metagenome; feces
152
77
-
Val
TAC
[ENA]
¢þ
>WENV183461622
OMDT01003328
[OMDT] human gut metagenome; feces
162
242
+
Tyr
GTA
[ENA]
¢þ
>WENV183461600
OMDT01001488
[OMDT] human gut metagenome; feces
165
74
-
Ser
GGA
[ENA]
¢þ
>WENV183461686
OMDT01023822
[OMDT] human gut metagenome; feces
169
97
-
Val
GAC
[ENA]
¢þ
>WENV183461678
OMDT01019331
[OMDT] human gut metagenome; feces
178
105
-
Ala
GGC
[ENA]
¢þ
>WENV183461628
OMDT01004133
[OMDT] human gut metagenome; feces
179
104
-
Gly
CCC
[ENA]
¢þ
>WENV183461613
OMDT01002216
[OMDT] human gut metagenome; feces
184
101
-
Leu
TAG
[ENA]
¢þ
>WENV183461583
OMDT01000789
[OMDT] human gut metagenome; feces
188
112
-
His
GTG
[ENA]
¢þ
>WENV183461664
OMDT01013564
[OMDT] human gut metagenome; feces
190
265
+
Lys
TTT
[ENA]
¢þ
>WENV183461567
OMDT01000391
[OMDT] human gut metagenome; feces
192
116
-
fMet
CAT
[ENA]
¢þ
>WENV183461671
OMDT01016313
[OMDT] human gut metagenome; feces
192
118
-
Gln
CTG
[ENA]
¢þ
>WENV183461681
OMDT01022039
[OMDT] human gut metagenome; feces
194
271
+
Asp
GTC
[ENA]
¢þ
>WENV183461626
OMDT01003973
[OMDT] human gut metagenome; feces
199
123
-
Arg
CCT
[ENA]
¢þ
>WENV183461685
OMDT01023482
[OMDT] human gut metagenome; feces
200
124
-
Arg
TCT
[ENA]
¢þ
>WENV183461655
OMDT01011100
[OMDT] human gut metagenome; feces
204
279
+
Ile2
CAT
[ENA]
¢þ
>WENV183461589
OMDT01000993
[OMDT] human gut metagenome; feces
217
293
+
Arg
ACG
[ENA]
¢þ
>WENV183461640
OMDT01006011
[OMDT] human gut metagenome; feces
218
142
-
Arg
CCG
[ENA]
¢þ
>WENV183461552
OMDT01000055
[OMDT] human gut metagenome; feces
223
147
-
Pro
TGG
[ENA]
¢þ
>WENV183461658
OMDT01011256
[OMDT] human gut metagenome; feces
233
309
+
Val
CAC
[ENA]
¢þ
>WENV183461614
OMDT01002487
[OMDT] human gut metagenome; feces
235
161
-
Thr
TGT
[ENA]
¢þ
>WENV183461661
OMDT01012590
[OMDT] human gut metagenome; feces
246
171
-
Gly
CCC
[ENA]
¢þ
>WENV183461652
OMDT01010010
[OMDT] human gut metagenome; feces
247
321
+
Ile
GAT
[ENA]
¢þ
>WENV183461606
OMDT01001833
[OMDT] human gut metagenome; feces
247
321
+
Cys
GCA
[ENA]
¢þ
>WENV183461624
OMDT01003437
[OMDT] human gut metagenome; feces
249
174
-
Ala
GGC
[ENA]
¢þ
>WENV183461662
OMDT01012907
[OMDT] human gut metagenome; feces
259
184
-
Trp
CCA
[ENA]
¢þ
>WENV183461582
OMDT01000789
[OMDT] human gut metagenome; feces
271
195
-
Arg
TCT
[ENA]
¢þ
>WENV183461683
OMDT01022892
[OMDT] human gut metagenome; feces
272
182
-
Trp
CCA
[ENA]
¢þ
>WENV183461676
OMDT01017398
[OMDT] human gut metagenome; feces
282
207
-
Gly
GCC
[ENA]
¢þ
>WENV183461684
OMDT01023482
[OMDT] human gut metagenome; feces
282
208
-
Gly
TCC
[ENA]
¢þ
>WENV183461665
OMDT01013564
[OMDT] human gut metagenome; feces
287
362
+
Thr
TGT
[ENA]
¢þ
>WENV183461603
OMDT01001563
[OMDT] human gut metagenome; feces
290
365
+
Ala
TGC
[ENA]
¢þ
>WENV183461679
OMDT01020059
[OMDT] human gut metagenome; feces
302
377
+
Trp
CCA
[ENA]
¢þ
>WENV183461601
OMDT01001491
[OMDT] human gut metagenome; feces
304
377
+
Gln
CTG
[ENA]
¢þ
>WENV183461636
OMDT01005560
[OMDT] human gut metagenome; feces
316
242
-
Gln
TTG
[ENA]
¢þ
>WENV183461677
OMDT01017922
[OMDT] human gut metagenome; feces
349
274
-
Pro
TGG
[ENA]
¢þ
>WENV183461682
OMDT01022892
[OMDT] human gut metagenome; feces
349
276
-
Phe
GAA
[ENA]
¢þ
>WENV183461576
OMDT01000604
[OMDT] human gut metagenome; feces
354
272
-
Leu
TAG
[ENA]
¢þ
>WENV183461618
OMDT01003081
[OMDT] human gut metagenome; feces
355
269
-
Leu
CAA
[ENA]
¢þ
>WENV183461675
OMDT01017398
[OMDT] human gut metagenome; feces
363
288
-
Phe
GAA
[ENA]
¢þ
>WENV183461680
OMDT01021933
[OMDT] human gut metagenome; feces
381
305
-
Pro
CGG
[ENA]
¢þ
>WENV183461602
OMDT01001491
[OMDT] human gut metagenome; feces
395
471
+
Glu
CTC
[ENA]
¢þ
>WENV183461604
OMDT01001563
[OMDT] human gut metagenome; feces
401
477
+
Ile
GAT
[ENA]
¢þ
>WENV183461674
OMDT01017398
[OMDT] human gut metagenome; feces
447
371
-
Asp
GTC
[ENA]
¢þ
>WENV183461645
OMDT01007513
[OMDT] human gut metagenome; feces
462
386
-
Ile
GAT
[ENA]
¢þ
>WENV183461575
OMDT01000604
[OMDT] human gut metagenome; feces
476
393
-
Leu
GAG
[ENA]
¢þ
>WENV183461666
OMDT01013564
[OMDT] human gut metagenome; feces
485
559
+
Thr
TGT
[ENA]
¢þ
>WENV183461673
OMDT01017398
[OMDT] human gut metagenome; feces
528
453
-
Val
TAC
[ENA]
¢þ
>WENV183461644
OMDT01007513
[OMDT] human gut metagenome; feces
541
466
-
Ala
TGC
[ENA]
¢þ
>WENV183461651
OMDT01009911
[OMDT] human gut metagenome; feces
564
639
+
Pro
CGG
[ENA]
¢þ
>WENV183461615
OMDT01002508
[OMDT] human gut metagenome; feces
567
641
+
Glu
CTC
[ENA]
¢þ
>WENV183461669
OMDT01016115
[OMDT] human gut metagenome; feces
570
652
+
Leu
TAG
[ENA]
¢þ
>WENV183461667
OMDT01013564
[OMDT] human gut metagenome; feces
586
662
+
Ile2
CAT
[ENA]
¢þ
>WENV183461634
OMDT01005337
[OMDT] human gut metagenome; feces
639
721
+
Leu
CAG
[ENA]
¢þ
>WENV183461654
OMDT01010927
[OMDT] human gut metagenome; feces
649
737
+
Ser
GGA
[ENA]
¢þ
>WENV183461672
OMDT01017398
[OMDT] human gut metagenome; feces
657
583
-
Cys
GCA
[ENA]
¢þ
>WENV183461668
OMDT01013564
[OMDT] human gut metagenome; feces
676
751
+
Trp
CCA
[ENA]
¢þ
>WENV183461616
OMDT01002508
[OMDT] human gut metagenome; feces
683
759
+
Asn
GTT
[ENA]
¢þ
>WENV183461556
OMDT01000129
[OMDT] human gut metagenome; feces
747
823
+
Arg
TCT
[ENA]
¢þ
>WENV183461660
OMDT01012561
[OMDT] human gut metagenome; feces
765
681
-
Leu
TAG
[ENA]
¢þ
>WENV183461650
OMDT01009760
[OMDT] human gut metagenome; feces
783
867
+
Leu
GAG
[ENA]
¢þ
>WENV183461648
OMDT01008818
[OMDT] human gut metagenome; feces
787
714
-
Gln
TTG
[ENA]
¢þ
>WENV183461609
OMDT01001976
[OMDT] human gut metagenome; feces
829
902
+
Gln
CTG
[ENA]
¢þ
>WENV183461591
OMDT01000998
[OMDT] human gut metagenome; feces
887
814
-
Gly
CCC
[ENA]
¢þ
>WENV183461627
OMDT01004033
[OMDT] human gut metagenome; feces
904
977
+
fMet
CAT
[ENA]
¢þ
>WENV183461610
OMDT01001976
[OMDT] human gut metagenome; feces
937
1012
+
Pro
CGG
[ENA]
¢þ
>WENV183461647
OMDT01008744
[OMDT] human gut metagenome; feces
944
1028
+
Leu
TAG
[ENA]
¢þ
>WENV183461612
OMDT01002035
[OMDT] human gut metagenome; feces
1037
961
-
fMet
CAT
[ENA]
¢þ
>WENV183461646
OMDT01007566
[OMDT] human gut metagenome; feces
1063
989
-
Ala
TGC
[ENA]
¢þ
>WENV183461638
OMDT01005828
[OMDT] human gut metagenome; feces
1091
1166
+
Lys
CTT
[ENA]
¢þ
>WENV183461631
OMDT01004835
[OMDT] human gut metagenome; feces
1194
1269
+
Trp
CCA
[ENA]
¢þ
>WENV183461639
OMDT01005828
[OMDT] human gut metagenome; feces
1222
1296
+
Glu
CTC
[ENA]
¢þ
>WENV183461633
OMDT01005336
[OMDT] human gut metagenome; feces
1247
1322
+
Phe
GAA
[ENA]
¢þ
>WENV183461635
OMDT01005412
[OMDT] human gut metagenome; feces
1268
1343
+
Val
TAC
[ENA]
¢þ
>WENV183461637
OMDT01005586
[OMDT] human gut metagenome; feces
1325
1244
-
Leu
TAG
[ENA]
¢þ
>WENV183461630
OMDT01004564
[OMDT] human gut metagenome; feces
1339
1415
+
Pro
CGG
[ENA]
¢þ
>WENV183461632
OMDT01005058
[OMDT] human gut metagenome; feces
1364
1292
-
Glu
TTC
[ENA]
¢þ
>WENV183461625
OMDT01003570
[OMDT] human gut metagenome; feces
1378
1451
+
Asn
GTT
[ENA]
¢þ
>WENV183461545
OMDT01000009
[OMDT] human gut metagenome; feces
1445
1370
-
Lys
TTT
[ENA]
¢þ
>WENV183461558
OMDT01000180
[OMDT] human gut metagenome; feces
1480
1566
+
Leu
TAA
[ENA]
¢þ
>WENV183461629
OMDT01004358
[OMDT] human gut metagenome; feces
1514
1438
-
Met
CAT
[ENA]
¢þ
>WENV183461617
OMDT01002538
[OMDT] human gut metagenome; feces
1620
1544
-
Asp
GTC
[ENA]
¢þ
>WENV183461623
OMDT01003328
[OMDT] human gut metagenome; feces
1691
1764
+
Trp
CCA
[ENA]
¢þ
>WENV183461620
OMDT01003305
[OMDT] human gut metagenome; feces
1697
1777
+
Leu
TAA
[ENA]
¢þ
>WENV183461586
OMDT01000920
[OMDT] human gut metagenome; feces
1899
1972
+
Gly
TCC
[ENA]
¢þ
>WENV183461578
OMDT01000683
[OMDT] human gut metagenome; feces
1970
1877
-
Ser
GCT
[ENA]
¢þ
>WENV183461569
OMDT01000401
[OMDT] human gut metagenome; feces
2038
1966
-
Arg
CCT
[ENA]
¢þ
>WENV183461577
OMDT01000683
[OMDT] human gut metagenome; feces
2092
2005
-
Ser
TGA
[ENA]
¢þ
>WENV183461573
OMDT01000532
[OMDT] human gut metagenome; feces
2110
2034
-
Arg
TCT
[ENA]
¢þ
>WENV183461611
OMDT01002034
[OMDT] human gut metagenome; feces
2157
2232
+
Ala
CGC
[ENA]
¢þ
>WENV183461607
OMDT01001862
[OMDT] human gut metagenome; feces
2290
2365
+
Gly
GCC
[ENA]
¢þ
>WENV183461599
OMDT01001484
[OMDT] human gut metagenome; feces
2648
2574
-
Gln
CTG
[ENA]
¢þ
>WENV183461598
OMDT01001363
[OMDT] human gut metagenome; feces
2706
2791
+
Tyr
GTA
[ENA]
¢þ
>WENV183461564
OMDT01000325
[OMDT] human gut metagenome; feces
2740
2665
-
Pro
GGG
[ENA]
¢þ
>WENV183461585
OMDT01000893
[OMDT] human gut metagenome; feces
2919
2843
-
Arg
ACG
[ENA]
¢þ
>WENV183461596
OMDT01001138
[OMDT] human gut metagenome; feces
2928
2853
-
Pro
CGG
[ENA]
¢þ
>WENV183461592
OMDT01001005
[OMDT] human gut metagenome; feces
3085
3159
+
Thr
TGT
[ENA]
¢þ
>WENV183461593
OMDT01001041
[OMDT] human gut metagenome; feces
3107
3183
+
Ile2
CAT
[ENA]
¢þ
>WENV183461588
OMDT01000992
[OMDT] human gut metagenome; feces
3120
3195
+
Thr
CGT
[ENA]
¢þ
>WENV183461590
OMDT01000993
[OMDT] human gut metagenome; feces
3203
3293
+
Ser
GCT
[ENA]
¢þ
>WENV183461574
OMDT01000595
[OMDT] human gut metagenome; feces
3215
3289
+
Gly
TCC
[ENA]
¢þ
>WENV183461587
OMDT01000951
[OMDT] human gut metagenome; feces
3272
3343
+
Cys
GCA
[ENA]
¢þ
>WENV183461559
OMDT01000186
[OMDT] human gut metagenome; feces
3389
3303
-
Leu
CAG
[ENA]
¢þ
>WENV183461570
OMDT01000430
[OMDT] human gut metagenome; feces
3458
3369
-
Ser
TGA
[ENA]
¢þ
>WENV183461580
OMDT01000759
[OMDT] human gut metagenome; feces
3506
3581
+
Gly
GCC
[ENA]
¢þ
>WENV183461584
OMDT01000861
[OMDT] human gut metagenome; feces
3522
3446
-
Arg
CCT
[ENA]
¢þ
>WENV183461581
OMDT01000759
[OMDT] human gut metagenome; feces
3616
3689
+
Cys
GCA
[ENA]
¢þ
>WENV183461572
OMDT01000491
[OMDT] human gut metagenome; feces
3631
3705
+
Ala
GGC
[ENA]
¢þ
>WENV183461543
OMDT01000005
[OMDT] human gut metagenome; feces
3838
3755
-
Leu
TAG
[ENA]
¢þ
>WENV183461551
OMDT01000047
[OMDT] human gut metagenome; feces
4263
4339
+
Ala
CGC
[ENA]
¢þ
>WENV183461571
OMDT01000436
[OMDT] human gut metagenome; feces
4781
4857
+
Glu
TTC
[ENA]
¢þ
>WENV183461568
OMDT01000401
[OMDT] human gut metagenome; feces
5456
5542
+
Ser
TGA
[ENA]
¢þ
>WENV183461566
OMDT01000347
[OMDT] human gut metagenome; feces
5805
5731
-
Ile2
CAT
[ENA]
¢þ
>WENV183461561
OMDT01000225
[OMDT] human gut metagenome; feces
5844
5930
+
Leu
CAG
[ENA]
¢þ
>WENV183461565
OMDT01000326
[OMDT] human gut metagenome; feces
5866
5949
+
Leu
CAA
[ENA]
¢þ
>WENV183461562
OMDT01000253
[OMDT] human gut metagenome; feces
5882
5805
-
Arg
TCT
[ENA]
¢þ
>WENV183461555
OMDT01000119
[OMDT] human gut metagenome; feces
8576
8648
+
Gly
CCC
[ENA]
¢þ
>WENV183461554
OMDT01000097
[OMDT] human gut metagenome; feces
9291
9375
+
Leu
TAA
[ENA]
¢þ
>WENV183461557
OMDT01000129
[OMDT] human gut metagenome; feces
9566
9642
+
Arg
CCG
[ENA]
¢þ
>WENV183461544
OMDT01000009
[OMDT] human gut metagenome; feces
10319
10245
-
Gly
CCC
[ENA]
¢þ
>WENV183461547
OMDT01000024
[OMDT] human gut metagenome; feces
13859
13784
-
Arg
CCT
[ENA]
¢þ
>WENV183461550
OMDT01000033
[OMDT] human gut metagenome; feces
15594
15668
+
Phe
GAA
[ENA]
¢þ
>WENV183461549
OMDT01000032
[OMDT] human gut metagenome; feces
15909
15983
+
Val
GAC
[ENA]
¢þ
>WENV183461546
OMDT01000017
[OMDT] human gut metagenome; feces
19496
19421
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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