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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OMEX] human gut metagenome; feces
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183476354
OMEX01005295
[OMEX] human gut metagenome; feces
15
101
+
Leu
TAA
[ENA]
¢þ
>WENV183476359
OMEX01006535
[OMEX] human gut metagenome; feces
25
99
+
Asn
GTT
[ENA]
¢þ
>WENV183476321
OMEX01001234
[OMEX] human gut metagenome; feces
25
100
+
Ile2
CAT
[ENA]
¢þ
>WENV183476332
OMEX01002092
[OMEX] human gut metagenome; feces
71
146
+
Thr
TGT
[ENA]
¢þ
>WENV183476355
OMEX01005305
[OMEX] human gut metagenome; feces
91
15
-
Arg
TCT
[ENA]
¢þ
>WENV183476367
OMEX01008368
[OMEX] human gut metagenome; feces
94
21
-
Ala
TGC
[ENA]
¢þ
>WENV183476345
OMEX01003501
[OMEX] human gut metagenome; feces
108
181
+
Cys
GCA
[ENA]
¢þ
>WENV183476322
OMEX01001234
[OMEX] human gut metagenome; feces
123
198
+
Asp
GTC
[ENA]
¢þ
>WENV183476328
OMEX01001585
[OMEX] human gut metagenome; feces
127
211
+
Leu
TAG
[ENA]
¢þ
>WENV183476333
OMEX01002092
[OMEX] human gut metagenome; feces
159
243
+
Tyr
GTA
[ENA]
¢þ
>WENV183476352
OMEX01004511
[OMEX] human gut metagenome; feces
163
76
-
Ser
CGA
[ENA]
¢þ
>WENV183476338
OMEX01002629
[OMEX] human gut metagenome; feces
175
101
-
Glu
TTC
[ENA]
¢þ
>WENV183476365
OMEX01008352
[OMEX] human gut metagenome; feces
185
112
-
Thr
CGT
[ENA]
¢þ
>WENV183476344
OMEX01003280
[OMEX] human gut metagenome; feces
188
101
-
Leu
CAG
[ENA]
¢þ
>WENV183476342
OMEX01003208
[OMEX] human gut metagenome; feces
190
116
-
Glu
CTC
[ENA]
¢þ
>WENV183476357
OMEX01005996
[OMEX] human gut metagenome; feces
195
120
-
Ile2
CAT
[ENA]
¢þ
>WENV183476292
OMEX01000110
[OMEX] human gut metagenome; feces
197
121
-
Arg
CCT
[ENA]
¢þ
>WENV183476306
OMEX01000511
[OMEX] human gut metagenome; feces
198
271
+
Thr
CGT
[ENA]
¢þ
>WENV183476323
OMEX01001234
[OMEX] human gut metagenome; feces
206
281
+
Val
TAC
[ENA]
¢þ
>WENV183476366
OMEX01008368
[OMEX] human gut metagenome; feces
210
136
-
Ile
GAT
[ENA]
¢þ
>WENV183476360
OMEX01006535
[OMEX] human gut metagenome; feces
234
309
+
Val
TAC
[ENA]
¢þ
>WENV183476340
OMEX01003141
[OMEX] human gut metagenome; feces
249
174
-
Gly
GCC
[ENA]
¢þ
>WENV183476368
OMEX01008542
[OMEX] human gut metagenome; feces
253
179
-
Met
CAT
[ENA]
¢þ
>WENV183476351
OMEX01004348
[OMEX] human gut metagenome; feces
257
185
-
Glu
TTC
[ENA]
¢þ
>WENV183476369
OMEX01008784
[OMEX] human gut metagenome; feces
275
348
+
fMet
CAT
[ENA]
¢þ
>WENV183476324
OMEX01001234
[OMEX] human gut metagenome; feces
288
363
+
Gly
GCC
[ENA]
¢þ
>WENV183476347
OMEX01003958
[OMEX] human gut metagenome; feces
292
367
+
Ala
GGC
[ENA]
¢þ
>WENV183476341
OMEX01003208
[OMEX] human gut metagenome; feces
311
236
-
Lys
CTT
[ENA]
¢þ
>WENV183476343
OMEX01003280
[OMEX] human gut metagenome; feces
313
227
-
Leu
GAG
[ENA]
¢þ
>WENV183476339
OMEX01002690
[OMEX] human gut metagenome; feces
325
399
+
Lys
CTT
[ENA]
¢þ
>WENV183476298
OMEX01000212
[OMEX] human gut metagenome; feces
329
253
-
Arg
ACG
[ENA]
¢þ
>WENV183476326
OMEX01001481
[OMEX] human gut metagenome; feces
355
280
-
Ile2
CAT
[ENA]
¢þ
>WENV183476307
OMEX01000511
[OMEX] human gut metagenome; feces
358
444
+
Leu
CAG
[ENA]
¢þ
>WENV183476291
OMEX01000110
[OMEX] human gut metagenome; feces
383
309
-
Gly
TCC
[ENA]
¢þ
>WENV183476305
OMEX01000471
[OMEX] human gut metagenome; feces
397
483
+
Leu
GAG
[ENA]
¢þ
>WENV183476325
OMEX01001234
[OMEX] human gut metagenome; feces
404
478
+
Cys
GCA
[ENA]
¢þ
>WENV183476362
OMEX01007465
[OMEX] human gut metagenome; feces
407
479
+
Glu
CTC
[ENA]
¢þ
>WENV183476297
OMEX01000212
[OMEX] human gut metagenome; feces
425
333
-
Ser
GCT
[ENA]
¢þ
>WENV183476361
OMEX01007403
[OMEX] human gut metagenome; feces
447
373
-
Ile2
CAT
[ENA]
¢þ
>WENV183476353
OMEX01004725
[OMEX] human gut metagenome; feces
453
540
+
Ser
TGA
[ENA]
¢þ
>WENV183476363
OMEX01007846
[OMEX] human gut metagenome; feces
454
380
-
Ala
GGC
[ENA]
¢þ
>WENV183476327
OMEX01001491
[OMEX] human gut metagenome; feces
455
380
-
Thr
CGT
[ENA]
¢þ
>WENV183476364
OMEX01008074
[OMEX] human gut metagenome; feces
527
455
-
Thr
GGT
[ENA]
¢þ
>WENV183476312
OMEX01000779
[OMEX] human gut metagenome; feces
553
628
+
Ala
GGC
[ENA]
¢þ
>WENV183476358
OMEX01006049
[OMEX] human gut metagenome; feces
578
503
-
Thr
GGT
[ENA]
¢þ
>WENV183476356
OMEX01005562
[OMEX] human gut metagenome; feces
602
529
-
Trp
CCA
[ENA]
¢þ
>WENV183476336
OMEX01002493
[OMEX] human gut metagenome; feces
642
736
+
SeC
TCA
[ENA]
¢þ
>WENV183476308
OMEX01000534
[OMEX] human gut metagenome; feces
651
725
+
Gln
TTG
[ENA]
¢þ
>WENV183476350
OMEX01004284
[OMEX] human gut metagenome; feces
669
751
+
Tyr
GTA
[ENA]
¢þ
>WENV183476329
OMEX01001719
[OMEX] human gut metagenome; feces
684
768
+
Tyr
GTA
[ENA]
¢þ
>WENV183476349
OMEX01004270
[OMEX] human gut metagenome; feces
695
623
-
Thr
GGT
[ENA]
¢þ
>WENV183476348
OMEX01004162
[OMEX] human gut metagenome; feces
708
783
+
Pro
TGG
[ENA]
¢þ
>WENV183476296
OMEX01000183
[OMEX] human gut metagenome; feces
719
794
+
Glu
TTC
[ENA]
¢þ
>WENV183476346
OMEX01003870
[OMEX] human gut metagenome; feces
749
822
+
Pro
CGG
[ENA]
¢þ
>WENV183476317
OMEX01001198
[OMEX] human gut metagenome; feces
761
835
+
Ile
GAT
[ENA]
¢þ
>WENV183476309
OMEX01000534
[OMEX] human gut metagenome; feces
767
842
+
Lys
TTT
[ENA]
¢þ
>WENV183476316
OMEX01001160
[OMEX] human gut metagenome; feces
777
850
+
Gly
CCC
[ENA]
¢þ
>WENV183476299
OMEX01000245
[OMEX] human gut metagenome; feces
825
749
-
Asp
GTC
[ENA]
¢þ
>WENV183476318
OMEX01001198
[OMEX] human gut metagenome; feces
850
924
+
Ala
TGC
[ENA]
¢þ
>WENV183476302
OMEX01000280
[OMEX] human gut metagenome; feces
883
809
-
Gly
TCC
[ENA]
¢þ
>WENV183476337
OMEX01002552
[OMEX] human gut metagenome; feces
902
976
+
Arg
CCT
[ENA]
¢þ
>WENV183476301
OMEX01000280
[OMEX] human gut metagenome; feces
962
887
-
Thr
TGT
[ENA]
¢þ
>WENV183476334
OMEX01002096
[OMEX] human gut metagenome; feces
998
1083
+
Leu
TAA
[ENA]
¢þ
>WENV183476313
OMEX01000830
[OMEX] human gut metagenome; feces
1017
1092
+
Gly
GCC
[ENA]
¢þ
>WENV183476331
OMEX01002049
[OMEX] human gut metagenome; feces
1029
954
-
Ala
CGC
[ENA]
¢þ
>WENV183476330
OMEX01001996
[OMEX] human gut metagenome; feces
1067
1143
+
Pro
GGG
[ENA]
¢þ
>WENV183476300
OMEX01000280
[OMEX] human gut metagenome; feces
1118
1043
-
Ile2
CAT
[ENA]
¢þ
>WENV183476335
OMEX01002228
[OMEX] human gut metagenome; feces
1126
1042
-
Leu
CAA
[ENA]
¢þ
>WENV183476304
OMEX01000311
[OMEX] human gut metagenome; feces
1186
1111
-
Thr
TGT
[ENA]
¢þ
>WENV183476315
OMEX01001147
[OMEX] human gut metagenome; feces
1191
1266
+
Asn
GTT
[ENA]
¢þ
>WENV183476311
OMEX01000747
[OMEX] human gut metagenome; feces
1222
1146
-
Ile
GAT
[ENA]
¢þ
>WENV183476303
OMEX01000311
[OMEX] human gut metagenome; feces
1263
1189
-
Asn
GTT
[ENA]
¢þ
>WENV183476314
OMEX01001003
[OMEX] human gut metagenome; feces
1318
1394
+
fMet
CAT
[ENA]
¢þ
>WENV183476310
OMEX01000747
[OMEX] human gut metagenome; feces
1321
1246
-
Ala
TGC
[ENA]
¢þ
>WENV183476320
OMEX01001210
[OMEX] human gut metagenome; feces
1369
1278
-
Ser
GCT
[ENA]
¢þ
>WENV183476319
OMEX01001210
[OMEX] human gut metagenome; feces
1472
1385
-
Ser
TGA
[ENA]
¢þ
>WENV183476293
OMEX01000132
[OMEX] human gut metagenome; feces
2168
2243
+
Val
TAC
[ENA]
¢þ
>WENV183476294
OMEX01000132
[OMEX] human gut metagenome; feces
2248
2323
+
Lys
TTT
[ENA]
¢þ
>WENV183476290
OMEX01000051
[OMEX] human gut metagenome; feces
2639
2563
-
Pro
CGG
[ENA]
¢þ
>WENV183476295
OMEX01000172
[OMEX] human gut metagenome; feces
2996
2911
-
Leu
CAA
[ENA]
¢þ
>WENV183476289
OMEX01000018
[OMEX] human gut metagenome; feces
5589
5664
+
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK