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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OMEY] human gut metagenome; feces
HIT:
101 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183476427
OMEY01002180
[OMEY] human gut metagenome; feces
29
113
+
Leu
CAA
[ENA]
¢þ
>WENV183476428
OMEY01002256
[OMEY] human gut metagenome; feces
72
146
+
Ala
TGC
[ENA]
¢þ
>WENV183476444
OMEY01003799
[OMEY] human gut metagenome; feces
76
151
+
Val
TAC
[ENA]
¢þ
>WENV183476406
OMEY01000601
[OMEY] human gut metagenome; feces
100
174
+
Cys
GCA
[ENA]
¢þ
>WENV183476417
OMEY01001797
[OMEY] human gut metagenome; feces
107
190
+
Leu
TAA
[ENA]
¢þ
>WENV183476469
OMEY01009815
[OMEY] human gut metagenome; feces
118
44
-
Ala
GGC
[ENA]
¢þ
>WENV183476431
OMEY01003017
[OMEY] human gut metagenome; feces
124
50
-
Asp
GTC
[ENA]
¢þ
>WENV183476441
OMEY01003478
[OMEY] human gut metagenome; feces
125
51
-
Lys
TTT
[ENA]
¢þ
>WENV183476455
OMEY01004694
[OMEY] human gut metagenome; feces
135
53
-
Leu
TAG
[ENA]
¢þ
>WENV183476409
OMEY01000743
[OMEY] human gut metagenome; feces
137
213
+
Ala
TGC
[ENA]
¢þ
>WENV183476460
OMEY01005397
[OMEY] human gut metagenome; feces
150
79
-
Glu
TTC
[ENA]
¢þ
>WENV183476445
OMEY01003799
[OMEY] human gut metagenome; feces
159
234
+
Thr
TGT
[ENA]
¢þ
>WENV183476405
OMEY01000581
[OMEY] human gut metagenome; feces
160
89
-
Gln
CTG
[ENA]
¢þ
>WENV183476383
OMEY01000097
[OMEY] human gut metagenome; feces
175
96
-
Leu
CAA
[ENA]
¢þ
>WENV183476454
OMEY01004572
[OMEY] human gut metagenome; feces
180
90
-
Ser
TGA
[ENA]
¢þ
>WENV183476470
OMEY01010019
[OMEY] human gut metagenome; feces
200
114
-
Ser
CGA
[ENA]
¢þ
>WENV183476446
OMEY01003799
[OMEY] human gut metagenome; feces
240
315
+
Lys
TTT
[ENA]
¢þ
>WENV183476442
OMEY01003527
[OMEY] human gut metagenome; feces
264
338
+
Glu
CTC
[ENA]
¢þ
>WENV183476453
OMEY01004572
[OMEY] human gut metagenome; feces
268
192
-
Ile2
CAT
[ENA]
¢þ
>WENV183476467
OMEY01008246
[OMEY] human gut metagenome; feces
276
191
-
Leu
CAG
[ENA]
¢þ
>WENV183476459
OMEY01005397
[OMEY] human gut metagenome; feces
279
207
-
Asn
GTT
[ENA]
¢þ
>WENV183476425
OMEY01002046
[OMEY] human gut metagenome; feces
299
388
+
Ser
GCT
[ENA]
¢þ
>WENV183476440
OMEY01003478
[OMEY] human gut metagenome; feces
305
230
-
His
GTG
[ENA]
¢þ
>WENV183476465
OMEY01006334
[OMEY] human gut metagenome; feces
320
396
+
Arg
CCG
[ENA]
¢þ
>WENV183476419
OMEY01001853
[OMEY] human gut metagenome; feces
323
397
+
Ile
GAT
[ENA]
¢þ
>WENV183476447
OMEY01003799
[OMEY] human gut metagenome; feces
325
398
+
Gly
TCC
[ENA]
¢þ
>WENV183476443
OMEY01003527
[OMEY] human gut metagenome; feces
342
417
+
Lys
CTT
[ENA]
¢þ
>WENV183476434
OMEY01003284
[OMEY] human gut metagenome; feces
345
417
+
Pro
TGG
[ENA]
¢þ
>WENV183476452
OMEY01004572
[OMEY] human gut metagenome; feces
358
282
-
Met
CAT
[ENA]
¢þ
>WENV183476464
OMEY01005881
[OMEY] human gut metagenome; feces
383
311
-
Gln
CTG
[ENA]
¢þ
>WENV183476433
OMEY01003121
[OMEY] human gut metagenome; feces
392
466
+
Asp
GTC
[ENA]
¢þ
>WENV183476468
OMEY01009772
[OMEY] human gut metagenome; feces
410
491
+
Leu
TAG
[ENA]
¢þ
>WENV183476448
OMEY01003799
[OMEY] human gut metagenome; feces
412
487
+
Asn
GTT
[ENA]
¢þ
>WENV183476439
OMEY01003478
[OMEY] human gut metagenome; feces
426
351
-
Arg
TCT
[ENA]
¢þ
>WENV183476420
OMEY01001853
[OMEY] human gut metagenome; feces
436
509
+
Ala
TGC
[ENA]
¢þ
>WENV183476418
OMEY01001798
[OMEY] human gut metagenome; feces
458
533
+
Gly
CCC
[ENA]
¢þ
>WENV183476449
OMEY01003799
[OMEY] human gut metagenome; feces
491
566
+
Glu
TTC
[ENA]
¢þ
>WENV183476466
OMEY01006682
[OMEY] human gut metagenome; feces
497
570
+
Lys
TTT
[ENA]
¢þ
>WENV183476429
OMEY01002517
[OMEY] human gut metagenome; feces
499
427
-
Arg
CCT
[ENA]
¢þ
>WENV183476451
OMEY01004430
[OMEY] human gut metagenome; feces
508
580
+
Glu
CTC
[ENA]
¢þ
>WENV183476421
OMEY01001853
[OMEY] human gut metagenome; feces
510
583
+
Ala
GGC
[ENA]
¢þ
>WENV183476462
OMEY01005811
[OMEY] human gut metagenome; feces
511
587
+
His
GTG
[ENA]
¢þ
>WENV183476463
OMEY01005881
[OMEY] human gut metagenome; feces
512
437
-
His
GTG
[ENA]
¢þ
>WENV183476422
OMEY01001964
[OMEY] human gut metagenome; feces
517
591
+
Trp
CCA
[ENA]
¢þ
>WENV183476438
OMEY01003478
[OMEY] human gut metagenome; feces
535
465
-
Gly
TCC
[ENA]
¢þ
>WENV183476456
OMEY01004795
[OMEY] human gut metagenome; feces
547
474
-
Thr
CGT
[ENA]
¢þ
>WENV183476458
OMEY01005033
[OMEY] human gut metagenome; feces
551
637
+
Leu
CAG
[ENA]
¢þ
>WENV183476461
OMEY01005518
[OMEY] human gut metagenome; feces
553
628
+
Thr
CGT
[ENA]
¢þ
>WENV183476415
OMEY01001431
[OMEY] human gut metagenome; feces
601
507
-
Ser
GCT
[ENA]
¢þ
>WENV183476437
OMEY01003478
[OMEY] human gut metagenome; feces
616
541
-
Pro
TGG
[ENA]
¢þ
>WENV183476457
OMEY01004993
[OMEY] human gut metagenome; feces
617
526
-
Ser
GGA
[ENA]
¢þ
>WENV183476430
OMEY01002562
[OMEY] human gut metagenome; feces
635
721
+
Ser
CGA
[ENA]
¢þ
>WENV183476413
OMEY01001336
[OMEY] human gut metagenome; feces
641
726
+
Tyr
GTA
[ENA]
¢þ
>WENV183476403
OMEY01000558
[OMEY] human gut metagenome; feces
675
750
+
Pro
TGG
[ENA]
¢þ
>WENV183476402
OMEY01000502
[OMEY] human gut metagenome; feces
690
763
+
Ile
GAT
[ENA]
¢þ
>WENV183476450
OMEY01003800
[OMEY] human gut metagenome; feces
708
782
+
Ala
GGC
[ENA]
¢þ
>WENV183476436
OMEY01003478
[OMEY] human gut metagenome; feces
745
671
-
Lys
TTT
[ENA]
¢þ
>WENV183476386
OMEY01000117
[OMEY] human gut metagenome; feces
750
676
-
Thr
TGT
[ENA]
¢þ
>WENV183476373
OMEY01000017
[OMEY] human gut metagenome; feces
792
716
-
Val
TAC
[ENA]
¢þ
>WENV183476404
OMEY01000580
[OMEY] human gut metagenome; feces
825
751
-
Thr
TGT
[ENA]
¢þ
>WENV183476435
OMEY01003478
[OMEY] human gut metagenome; feces
832
760
-
Gln
TTG
[ENA]
¢þ
>WENV183476432
OMEY01003096
[OMEY] human gut metagenome; feces
852
764
-
Ser
GGA
[ENA]
¢þ
>WENV183476407
OMEY01000601
[OMEY] human gut metagenome; feces
855
942
+
Ser
GCT
[ENA]
¢þ
>WENV183476424
OMEY01001996
[OMEY] human gut metagenome; feces
918
843
-
Pro
CGG
[ENA]
¢þ
>WENV183476410
OMEY01000784
[OMEY] human gut metagenome; feces
954
881
-
Trp
CCA
[ENA]
¢þ
>WENV183476392
OMEY01000285
[OMEY] human gut metagenome; feces
988
1062
+
Asp
GTC
[ENA]
¢þ
>WENV183476423
OMEY01001996
[OMEY] human gut metagenome; feces
1020
947
-
Gln
CTG
[ENA]
¢þ
>WENV183476387
OMEY01000131
[OMEY] human gut metagenome; feces
1062
987
-
His
GTG
[ENA]
¢þ
>WENV183476411
OMEY01001178
[OMEY] human gut metagenome; feces
1100
1183
+
Tyr
GTA
[ENA]
¢þ
>WENV183476393
OMEY01000310
[OMEY] human gut metagenome; feces
1122
1050
-
Arg
CCG
[ENA]
¢þ
>WENV183476426
OMEY01002080
[OMEY] human gut metagenome; feces
1141
1056
-
Ser
TGA
[ENA]
¢þ
>WENV183476399
OMEY01000320
[OMEY] human gut metagenome; feces
1221
1139
-
Tyr
GTA
[ENA]
¢þ
>WENV183476416
OMEY01001513
[OMEY] human gut metagenome; feces
1248
1322
+
Glu
CTC
[ENA]
¢þ
>WENV183476412
OMEY01001178
[OMEY] human gut metagenome; feces
1277
1349
+
Thr
GGT
[ENA]
¢þ
>WENV183476414
OMEY01001427
[OMEY] human gut metagenome; feces
1379
1453
+
Ile
GAT
[ENA]
¢þ
>WENV183476398
OMEY01000320
[OMEY] human gut metagenome; feces
1457
1385
-
Glu
TTC
[ENA]
¢þ
>WENV183476397
OMEY01000320
[OMEY] human gut metagenome; feces
1533
1462
-
Gln
TTG
[ENA]
¢þ
>WENV183476396
OMEY01000320
[OMEY] human gut metagenome; feces
1611
1538
-
Trp
CCA
[ENA]
¢þ
>WENV183476371
OMEY01000002
[OMEY] human gut metagenome; feces
1625
1699
+
Ile2
CAT
[ENA]
¢þ
>WENV183476395
OMEY01000320
[OMEY] human gut metagenome; feces
1691
1618
-
Asn
GTT
[ENA]
¢þ
>WENV183476391
OMEY01000276
[OMEY] human gut metagenome; feces
1803
1730
-
fMet
CAT
[ENA]
¢þ
>WENV183476394
OMEY01000320
[OMEY] human gut metagenome; feces
1981
1908
-
fMet
CAT
[ENA]
¢þ
>WENV183476390
OMEY01000272
[OMEY] human gut metagenome; feces
2082
2170
+
Ser
GGA
[ENA]
¢þ
>WENV183476408
OMEY01000663
[OMEY] human gut metagenome; feces
2253
2327
+
Met
CAT
[ENA]
¢þ
>WENV183476401
OMEY01000410
[OMEY] human gut metagenome; feces
2668
2594
-
Ala
GGC
[ENA]
¢þ
>WENV183476400
OMEY01000342
[OMEY] human gut metagenome; feces
3360
3285
-
Lys
TTT
[ENA]
¢þ
>WENV183476384
OMEY01000098
[OMEY] human gut metagenome; feces
4305
4377
+
Arg
CCT
[ENA]
¢þ
>WENV183476382
OMEY01000079
[OMEY] human gut metagenome; feces
4422
4338
-
Leu
CAA
[ENA]
¢þ
>WENV183476389
OMEY01000207
[OMEY] human gut metagenome; feces
4735
4660
-
Pro
GGG
[ENA]
¢þ
>WENV183476388
OMEY01000207
[OMEY] human gut metagenome; feces
4819
4747
-
Gln
CTG
[ENA]
¢þ
>WENV183476385
OMEY01000115
[OMEY] human gut metagenome; feces
5626
5708
+
Leu
TAG
[ENA]
¢þ
>WENV183476381
OMEY01000078
[OMEY] human gut metagenome; feces
7481
7555
+
Asn
GTT
[ENA]
¢þ
>WENV183476376
OMEY01000039
[OMEY] human gut metagenome; feces
7965
7892
-
Trp
CCA
[ENA]
¢þ
>WENV183476380
OMEY01000076
[OMEY] human gut metagenome; feces
8428
8354
-
Glu
TTC
[ENA]
¢þ
>WENV183476379
OMEY01000066
[OMEY] human gut metagenome; feces
8465
8393
-
Glu
TTC
[ENA]
¢þ
>WENV183476372
OMEY01000015
[OMEY] human gut metagenome; feces
8771
8856
+
Ser
TGA
[ENA]
¢þ
>WENV183476377
OMEY01000056
[OMEY] human gut metagenome; feces
9468
9541
+
Gly
GCC
[ENA]
¢þ
>WENV183476378
OMEY01000056
[OMEY] human gut metagenome; feces
9557
9642
+
Leu
TAA
[ENA]
¢þ
>WENV183476375
OMEY01000035
[OMEY] human gut metagenome; feces
10391
10318
-
Pro
CGG
[ENA]
¢þ
>WENV183476374
OMEY01000035
[OMEY] human gut metagenome; feces
10572
10647
+
Phe
GAA
[ENA]
¢þ
>WENV183476370
OMEY01000001
[OMEY] human gut metagenome; feces
32666
32595
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK