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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OMFT] human gut metagenome; feces
HIT:
82 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183487118
OMFT01002729
[OMFT] human gut metagenome; feces
3
76
+
Trp
CCA
[ENA]
¢þ
>WENV183487096
OMFT01001633
[OMFT] human gut metagenome; feces
85
12
-
Thr
CGT
[ENA]
¢þ
>WENV183487126
OMFT01004658
[OMFT] human gut metagenome; feces
130
205
+
Ile
GAT
[ENA]
¢þ
>WENV183487119
OMFT01003259
[OMFT] human gut metagenome; feces
146
72
-
Pro
TGG
[ENA]
¢þ
>WENV183487115
OMFT01002443
[OMFT] human gut metagenome; feces
153
60
-
Ser
GCT
[ENA]
¢þ
>WENV183487129
OMFT01005669
[OMFT] human gut metagenome; feces
159
243
+
Leu
GAG
[ENA]
¢þ
>WENV183487132
OMFT01005855
[OMFT] human gut metagenome; feces
162
89
-
Gly
TCC
[ENA]
¢þ
>WENV183487078
OMFT01000944
[OMFT] human gut metagenome; feces
178
104
-
Asn
GTT
[ENA]
¢þ
>WENV183487123
OMFT01003870
[OMFT] human gut metagenome; feces
210
285
+
Pro
CGG
[ENA]
¢þ
>WENV183487059
OMFT01000115
[OMFT] human gut metagenome; feces
211
136
-
Pro
GGG
[ENA]
¢þ
>WENV183487127
OMFT01004658
[OMFT] human gut metagenome; feces
240
314
+
Ala
TGC
[ENA]
¢þ
>WENV183487069
OMFT01000480
[OMFT] human gut metagenome; feces
245
317
+
Arg
CCT
[ENA]
¢þ
>WENV183487131
OMFT01005855
[OMFT] human gut metagenome; feces
248
172
-
Pro
TGG
[ENA]
¢þ
>WENV183487114
OMFT01002443
[OMFT] human gut metagenome; feces
276
188
-
Ser
TGA
[ENA]
¢þ
>WENV183487099
OMFT01001777
[OMFT] human gut metagenome; feces
308
233
-
Arg
TCT
[ENA]
¢þ
>WENV183487090
OMFT01001373
[OMFT] human gut metagenome; feces
349
275
-
Lys
TTT
[ENA]
¢þ
>WENV183487130
OMFT01005855
[OMFT] human gut metagenome; feces
354
281
-
Gln
CTG
[ENA]
¢þ
>WENV183487106
OMFT01002329
[OMFT] human gut metagenome; feces
357
443
+
Leu
TAA
[ENA]
¢þ
>WENV183487125
OMFT01004623
[OMFT] human gut metagenome; feces
360
285
-
Trp
CCA
[ENA]
¢þ
>WENV183487128
OMFT01005275
[OMFT] human gut metagenome; feces
400
474
+
Lys
CTT
[ENA]
¢þ
>WENV183487120
OMFT01003575
[OMFT] human gut metagenome; feces
420
338
-
Leu
CAA
[ENA]
¢þ
>WENV183487089
OMFT01001373
[OMFT] human gut metagenome; feces
429
354
-
Gln
TTG
[ENA]
¢þ
>WENV183487100
OMFT01001826
[OMFT] human gut metagenome; feces
457
532
+
Pro
TGG
[ENA]
¢þ
>WENV183487113
OMFT01002443
[OMFT] human gut metagenome; feces
458
384
-
Phe
GAA
[ENA]
¢þ
>WENV183487105
OMFT01002265
[OMFT] human gut metagenome; feces
474
403
-
Cys
GCA
[ENA]
¢þ
>WENV183487121
OMFT01003651
[OMFT] human gut metagenome; feces
524
608
+
Leu
CAA
[ENA]
¢þ
>WENV183487088
OMFT01001373
[OMFT] human gut metagenome; feces
527
453
-
His
GTG
[ENA]
¢þ
>WENV183487112
OMFT01002443
[OMFT] human gut metagenome; feces
536
462
-
fMet
CAT
[ENA]
¢þ
>WENV183487084
OMFT01001351
[OMFT] human gut metagenome; feces
546
475
-
Gln
TTG
[ENA]
¢þ
>WENV183487108
OMFT01002432
[OMFT] human gut metagenome; feces
561
636
+
Pro
TGG
[ENA]
¢þ
>WENV183487124
OMFT01003893
[OMFT] human gut metagenome; feces
587
512
-
Val
GAC
[ENA]
¢þ
>WENV183487093
OMFT01001542
[OMFT] human gut metagenome; feces
590
665
+
Ala
TGC
[ENA]
¢þ
>WENV183487087
OMFT01001373
[OMFT] human gut metagenome; feces
643
568
-
Arg
TCT
[ENA]
¢þ
>WENV183487101
OMFT01001884
[OMFT] human gut metagenome; feces
655
728
+
Lys
CTT
[ENA]
¢þ
>WENV183487083
OMFT01001346
[OMFT] human gut metagenome; feces
679
753
+
Thr
TGT
[ENA]
¢þ
>WENV183487094
OMFT01001542
[OMFT] human gut metagenome; feces
685
761
+
Ile
GAT
[ENA]
¢þ
>WENV183487071
OMFT01000598
[OMFT] human gut metagenome; feces
693
766
+
fMet
CAT
[ENA]
¢þ
>WENV183487111
OMFT01002443
[OMFT] human gut metagenome; feces
727
655
-
Thr
TGT
[ENA]
¢þ
>WENV183487122
OMFT01003721
[OMFT] human gut metagenome; feces
733
657
-
Ile
GAT
[ENA]
¢þ
>WENV183487086
OMFT01001373
[OMFT] human gut metagenome; feces
735
665
-
Gly
TCC
[ENA]
¢þ
>WENV183487104
OMFT01002200
[OMFT] human gut metagenome; feces
802
727
-
His
GTG
[ENA]
¢þ
>WENV183487085
OMFT01001373
[OMFT] human gut metagenome; feces
816
741
-
Pro
TGG
[ENA]
¢þ
>WENV183487110
OMFT01002443
[OMFT] human gut metagenome; feces
835
764
-
Glu
TTC
[ENA]
¢þ
>WENV183487117
OMFT01002726
[OMFT] human gut metagenome; feces
843
915
+
Arg
CCT
[ENA]
¢þ
>WENV183487107
OMFT01002388
[OMFT] human gut metagenome; feces
845
757
-
Ser
GGA
[ENA]
¢þ
>WENV183487116
OMFT01002590
[OMFT] human gut metagenome; feces
873
787
-
Leu
CAG
[ENA]
¢þ
>WENV183487091
OMFT01001457
[OMFT] human gut metagenome; feces
878
951
+
Thr
CGT
[ENA]
¢þ
>WENV183487109
OMFT01002443
[OMFT] human gut metagenome; feces
936
860
-
Asn
GTT
[ENA]
¢þ
>WENV183487092
OMFT01001457
[OMFT] human gut metagenome; feces
981
1054
+
Gly
CCC
[ENA]
¢þ
>WENV183487103
OMFT01002099
[OMFT] human gut metagenome; feces
991
907
-
Leu
GAG
[ENA]
¢þ
>WENV183487098
OMFT01001771
[OMFT] human gut metagenome; feces
1057
1128
+
Gln
TTG
[ENA]
¢þ
>WENV183487102
OMFT01002099
[OMFT] human gut metagenome; feces
1096
1014
-
Leu
CAG
[ENA]
¢þ
>WENV183487072
OMFT01000670
[OMFT] human gut metagenome; feces
1129
1203
+
Ile
GAT
[ENA]
¢þ
>WENV183487079
OMFT01000958
[OMFT] human gut metagenome; feces
1135
1061
-
Thr
TGT
[ENA]
¢þ
>WENV183487066
OMFT01000285
[OMFT] human gut metagenome; feces
1163
1234
+
Gln
CTG
[ENA]
¢þ
>WENV183487081
OMFT01000976
[OMFT] human gut metagenome; feces
1175
1103
-
Glu
CTC
[ENA]
¢þ
>WENV183487097
OMFT01001654
[OMFT] human gut metagenome; feces
1267
1182
-
Ser
TGA
[ENA]
¢þ
>WENV183487095
OMFT01001597
[OMFT] human gut metagenome; feces
1287
1374
+
Ser
GCT
[ENA]
¢þ
>WENV183487080
OMFT01000976
[OMFT] human gut metagenome; feces
1290
1203
-
Ser
GCT
[ENA]
¢þ
>WENV183487073
OMFT01000670
[OMFT] human gut metagenome; feces
1294
1368
+
Ala
TGC
[ENA]
¢þ
>WENV183487065
OMFT01000228
[OMFT] human gut metagenome; feces
1382
1455
+
Gly
GCC
[ENA]
¢þ
>WENV183487070
OMFT01000536
[OMFT] human gut metagenome; feces
1543
1467
-
Asp
GTC
[ENA]
¢þ
>WENV183487082
OMFT01001333
[OMFT] human gut metagenome; feces
1569
1495
-
Ile2
CAT
[ENA]
¢þ
>WENV183487062
OMFT01000135
[OMFT] human gut metagenome; feces
1588
1514
-
Ile2
CAT
[ENA]
¢þ
>WENV183487077
OMFT01000763
[OMFT] human gut metagenome; feces
1727
1643
-
Leu
CAA
[ENA]
¢þ
>WENV183487076
OMFT01000725
[OMFT] human gut metagenome; feces
2047
1972
-
Arg
ACG
[ENA]
¢þ
>WENV183487068
OMFT01000454
[OMFT] human gut metagenome; feces
2091
2163
+
Arg
CCT
[ENA]
¢þ
>WENV183487064
OMFT01000203
[OMFT] human gut metagenome; feces
2124
2199
+
Val
TAC
[ENA]
¢þ
>WENV183487075
OMFT01000725
[OMFT] human gut metagenome; feces
2165
2080
-
Leu
TAA
[ENA]
¢þ
>WENV183487074
OMFT01000725
[OMFT] human gut metagenome; feces
2260
2186
-
Val
TAC
[ENA]
¢þ
>WENV183487052
OMFT01000027
[OMFT] human gut metagenome; feces
2370
2286
-
Leu
TAG
[ENA]
¢þ
>WENV183487055
OMFT01000059
[OMFT] human gut metagenome; feces
2615
2697
+
Tyr
GTA
[ENA]
¢þ
>WENV183487067
OMFT01000414
[OMFT] human gut metagenome; feces
2671
2753
+
Leu
TAG
[ENA]
¢þ
>WENV183487056
OMFT01000059
[OMFT] human gut metagenome; feces
2790
2862
+
Thr
GGT
[ENA]
¢þ
>WENV183487061
OMFT01000121
[OMFT] human gut metagenome; feces
3396
3323
-
Phe
GAA
[ENA]
¢þ
>WENV183487053
OMFT01000036
[OMFT] human gut metagenome; feces
3429
3504
+
Arg
ACG
[ENA]
¢þ
>WENV183487054
OMFT01000036
[OMFT] human gut metagenome; feces
3749
3822
+
His
GTG
[ENA]
¢þ
>WENV183487058
OMFT01000065
[OMFT] human gut metagenome; feces
3933
3861
-
Glu
TTC
[ENA]
¢þ
>WENV183487060
OMFT01000121
[OMFT] human gut metagenome; feces
3937
4010
+
Pro
CGG
[ENA]
¢þ
>WENV183487063
OMFT01000155
[OMFT] human gut metagenome; feces
4032
4114
+
Leu
CAA
[ENA]
¢þ
>WENV183487051
OMFT01000006
[OMFT] human gut metagenome; feces
4050
4124
+
Met
CAT
[ENA]
¢þ
>WENV183487057
OMFT01000059
[OMFT] human gut metagenome; feces
4191
4264
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK