This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OMGZ] human oral metagenome; human oral
HIT:
85 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183507937
OMGZ01001238
[OMGZ] human oral metagenome; human oral
5
81
+
Ile
GAT
[ENA]
¢þ
>WENV183507897
OMGZ01000098
[OMGZ] human oral metagenome; human oral
92
17
-
Met
CAT
[ENA]
¢þ
>WENV183507946
OMGZ01001406
[OMGZ] human oral metagenome; human oral
114
188
+
Ile
GAT
[ENA]
¢þ
>WENV183507952
OMGZ01002024
[OMGZ] human oral metagenome; human oral
116
192
+
Thr
TGT
[ENA]
¢þ
>WENV183507927
OMGZ01000903
[OMGZ] human oral metagenome; human oral
137
210
+
Phe
GAA
[ENA]
¢þ
>WENV183507966
OMGZ01003040
[OMGZ] human oral metagenome; human oral
144
228
+
Leu
GAG
[ENA]
¢þ
>WENV183507960
OMGZ01002705
[OMGZ] human oral metagenome; human oral
161
235
+
Glu
TTC
[ENA]
¢þ
>WENV183507969
OMGZ01003385
[OMGZ] human oral metagenome; human oral
176
104
-
Arg
CCT
[ENA]
¢þ
>WENV183507951
OMGZ01001857
[OMGZ] human oral metagenome; human oral
185
100
-
Ser
CGA
[ENA]
¢þ
>WENV183507953
OMGZ01002024
[OMGZ] human oral metagenome; human oral
201
285
+
Tyr
GTA
[ENA]
¢þ
>WENV183507905
OMGZ01000247
[OMGZ] human oral metagenome; human oral
219
146
-
Lys
TTT
[ENA]
¢þ
>WENV183507900
OMGZ01000141
[OMGZ] human oral metagenome; human oral
220
291
+
Cys
GCA
[ENA]
¢þ
>WENV183507954
OMGZ01002110
[OMGZ] human oral metagenome; human oral
233
320
+
Ser
TGA
[ENA]
¢þ
>WENV183507963
OMGZ01002870
[OMGZ] human oral metagenome; human oral
250
162
-
Ser
GGA
[ENA]
¢þ
>WENV183507957
OMGZ01002298
[OMGZ] human oral metagenome; human oral
253
324
+
Gln
CTG
[ENA]
¢þ
>WENV183507949
OMGZ01001541
[OMGZ] human oral metagenome; human oral
263
337
+
Ile
GAT
[ENA]
¢þ
>WENV183507970
OMGZ01004046
[OMGZ] human oral metagenome; human oral
264
190
-
fMet
CAT
[ENA]
¢þ
>WENV183507956
OMGZ01002205
[OMGZ] human oral metagenome; human oral
269
195
-
Pro
TGG
[ENA]
¢þ
>WENV183507967
OMGZ01003122
[OMGZ] human oral metagenome; human oral
287
372
+
Leu
TAA
[ENA]
¢þ
>WENV183507926
OMGZ01000795
[OMGZ] human oral metagenome; human oral
294
222
-
Gly
GCC
[ENA]
¢þ
>WENV183507930
OMGZ01000969
[OMGZ] human oral metagenome; human oral
313
237
-
Arg
TCT
[ENA]
¢þ
>WENV183507934
OMGZ01001148
[OMGZ] human oral metagenome; human oral
316
245
-
Gly
CCC
[ENA]
¢þ
>WENV183507911
OMGZ01000409
[OMGZ] human oral metagenome; human oral
334
421
+
Ser
GCT
[ENA]
¢þ
>WENV183507947
OMGZ01001460
[OMGZ] human oral metagenome; human oral
354
282
-
Glu
CTC
[ENA]
¢þ
>WENV183507958
OMGZ01002298
[OMGZ] human oral metagenome; human oral
371
443
+
Glu
CTC
[ENA]
¢þ
>WENV183507964
OMGZ01002971
[OMGZ] human oral metagenome; human oral
373
462
+
Ser
CGA
[ENA]
¢þ
>WENV183507955
OMGZ01002143
[OMGZ] human oral metagenome; human oral
387
460
+
Pro
GGG
[ENA]
¢þ
>WENV183507921
OMGZ01000680
[OMGZ] human oral metagenome; human oral
403
478
+
Asp
GTC
[ENA]
¢þ
>WENV183507925
OMGZ01000795
[OMGZ] human oral metagenome; human oral
410
331
-
Leu
TAG
[ENA]
¢þ
>WENV183507962
OMGZ01002870
[OMGZ] human oral metagenome; human oral
428
342
-
Ser
CGA
[ENA]
¢þ
>WENV183507968
OMGZ01003266
[OMGZ] human oral metagenome; human oral
429
503
+
Lys
TTT
[ENA]
¢þ
>WENV183507915
OMGZ01000455
[OMGZ] human oral metagenome; human oral
435
508
+
Thr
CGT
[ENA]
¢þ
>WENV183507965
OMGZ01002997
[OMGZ] human oral metagenome; human oral
444
533
+
Ser
TGA
[ENA]
¢þ
>WENV183507950
OMGZ01001857
[OMGZ] human oral metagenome; human oral
448
355
-
Ser
GCT
[ENA]
¢þ
>WENV183507907
OMGZ01000262
[OMGZ] human oral metagenome; human oral
490
563
+
Ala
TGC
[ENA]
¢þ
>WENV183507944
OMGZ01001303
[OMGZ] human oral metagenome; human oral
495
423
-
Thr
GGT
[ENA]
¢þ
>WENV183507929
OMGZ01000969
[OMGZ] human oral metagenome; human oral
498
424
-
Gly
TCC
[ENA]
¢þ
>WENV183507945
OMGZ01001316
[OMGZ] human oral metagenome; human oral
503
429
-
Val
TAC
[ENA]
¢þ
>WENV183507948
OMGZ01001525
[OMGZ] human oral metagenome; human oral
504
431
-
Val
TAC
[ENA]
¢þ
>WENV183507961
OMGZ01002870
[OMGZ] human oral metagenome; human oral
510
434
-
Arg
GCG
[ENA]
¢þ
>WENV183507917
OMGZ01000572
[OMGZ] human oral metagenome; human oral
527
453
-
Ile2
CAT
[ENA]
¢þ
>WENV183507922
OMGZ01000680
[OMGZ] human oral metagenome; human oral
545
617
+
Pro
CGG
[ENA]
¢þ
>WENV183507959
OMGZ01002526
[OMGZ] human oral metagenome; human oral
546
472
-
Gly
CCC
[ENA]
¢þ
>WENV183507924
OMGZ01000795
[OMGZ] human oral metagenome; human oral
566
494
-
Lys
CTT
[ENA]
¢þ
>WENV183507936
OMGZ01001187
[OMGZ] human oral metagenome; human oral
594
510
-
Leu
GAG
[ENA]
¢þ
>WENV183507943
OMGZ01001303
[OMGZ] human oral metagenome; human oral
611
525
-
Tyr
GTA
[ENA]
¢þ
>WENV183507942
OMGZ01001297
[OMGZ] human oral metagenome; human oral
612
522
-
Leu
GAG
[ENA]
¢þ
>WENV183507932
OMGZ01001137
[OMGZ] human oral metagenome; human oral
622
694
+
His
GTG
[ENA]
¢þ
>WENV183507939
OMGZ01001271
[OMGZ] human oral metagenome; human oral
673
599
-
Gln
TTG
[ENA]
¢þ
>WENV183507916
OMGZ01000555
[OMGZ] human oral metagenome; human oral
684
758
+
Thr
TGT
[ENA]
¢þ
>WENV183507941
OMGZ01001297
[OMGZ] human oral metagenome; human oral
700
625
-
Lys
TTT
[ENA]
¢þ
>WENV183507899
OMGZ01000133
[OMGZ] human oral metagenome; human oral
705
787
+
Leu
TAG
[ENA]
¢þ
>WENV183507938
OMGZ01001259
[OMGZ] human oral metagenome; human oral
707
632
-
Ala
TGC
[ENA]
¢þ
>WENV183507935
OMGZ01001187
[OMGZ] human oral metagenome; human oral
713
629
-
Leu
CAG
[ENA]
¢þ
>WENV183507914
OMGZ01000440
[OMGZ] human oral metagenome; human oral
731
657
-
Ala
TGC
[ENA]
¢þ
>WENV183507933
OMGZ01001137
[OMGZ] human oral metagenome; human oral
760
836
+
Arg
TCT
[ENA]
¢þ
>WENV183507931
OMGZ01000989
[OMGZ] human oral metagenome; human oral
772
847
+
Arg
TCT
[ENA]
¢þ
>WENV183507940
OMGZ01001297
[OMGZ] human oral metagenome; human oral
779
704
-
His
GTG
[ENA]
¢þ
>WENV183507928
OMGZ01000917
[OMGZ] human oral metagenome; human oral
784
867
+
Leu
GAG
[ENA]
¢þ
>WENV183507913
OMGZ01000440
[OMGZ] human oral metagenome; human oral
806
732
-
Ile
GAT
[ENA]
¢þ
>WENV183507906
OMGZ01000249
[OMGZ] human oral metagenome; human oral
928
855
-
Lys
CTT
[ENA]
¢þ
>WENV183507918
OMGZ01000642
[OMGZ] human oral metagenome; human oral
936
1011
+
Asn
GTT
[ENA]
¢þ
>WENV183507909
OMGZ01000314
[OMGZ] human oral metagenome; human oral
950
1026
+
Val
TAC
[ENA]
¢þ
>WENV183507919
OMGZ01000642
[OMGZ] human oral metagenome; human oral
1030
1106
+
Gln
TTG
[ENA]
¢þ
>WENV183507923
OMGZ01000688
[OMGZ] human oral metagenome; human oral
1031
1123
+
Ser
GCT
[ENA]
¢þ
>WENV183507896
OMGZ01000066
[OMGZ] human oral metagenome; human oral
1104
1179
+
Pro
TGG
[ENA]
¢þ
>WENV183507920
OMGZ01000642
[OMGZ] human oral metagenome; human oral
1147
1222
+
Lys
TTT
[ENA]
¢þ
>WENV183507912
OMGZ01000428
[OMGZ] human oral metagenome; human oral
1509
1436
-
Asn
GTT
[ENA]
¢þ
>WENV183507903
OMGZ01000213
[OMGZ] human oral metagenome; human oral
1564
1490
-
Asp
GTC
[ENA]
¢þ
>WENV183507910
OMGZ01000383
[OMGZ] human oral metagenome; human oral
1590
1661
+
Gly
TCC
[ENA]
¢þ
>WENV183507908
OMGZ01000267
[OMGZ] human oral metagenome; human oral
1776
1703
-
Trp
CCA
[ENA]
¢þ
>WENV183507904
OMGZ01000216
[OMGZ] human oral metagenome; human oral
1881
1952
+
Gln
CTG
[ENA]
¢þ
>WENV183507901
OMGZ01000146
[OMGZ] human oral metagenome; human oral
2187
2261
+
Arg
CCT
[ENA]
¢þ
>WENV183507895
OMGZ01000065
[OMGZ] human oral metagenome; human oral
2425
2350
-
Pro
GGG
[ENA]
¢þ
>WENV183507890
OMGZ01000020
[OMGZ] human oral metagenome; human oral
2525
2609
+
Leu
CAA
[ENA]
¢þ
>WENV183507898
OMGZ01000132
[OMGZ] human oral metagenome; human oral
3068
3146
+
Ala
GGC
[ENA]
¢þ
>WENV183507891
OMGZ01000022
[OMGZ] human oral metagenome; human oral
3114
3188
+
Asn
GTT
[ENA]
¢þ
>WENV183507892
OMGZ01000022
[OMGZ] human oral metagenome; human oral
3210
3284
+
Asn
GTT
[ENA]
¢þ
>WENV183507902
OMGZ01000178
[OMGZ] human oral metagenome; human oral
3275
3348
+
Gly
CCC
[ENA]
¢þ
>WENV183507889
OMGZ01000019
[OMGZ] human oral metagenome; human oral
4149
4221
+
fMet
CAT
[ENA]
¢þ
>WENV183507887
OMGZ01000012
[OMGZ] human oral metagenome; human oral
4993
5067
+
His
GTG
[ENA]
¢þ
>WENV183507893
OMGZ01000028
[OMGZ] human oral metagenome; human oral
5585
5512
-
Pro
CGG
[ENA]
¢þ
>WENV183507894
OMGZ01000030
[OMGZ] human oral metagenome; human oral
6066
6138
+
Glu
TTC
[ENA]
¢þ
>WENV183507886
OMGZ01000008
[OMGZ] human oral metagenome; human oral
6266
6339
+
Gly
GCC
[ENA]
¢þ
>WENV183507888
OMGZ01000016
[OMGZ] human oral metagenome; human oral
8888
8976
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK