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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OMHL] human oral metagenome; human oral
HIT:
145 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183510033
OMHL01003146
[OMHL] human oral metagenome; human oral
17
91
+
Gly
GCC
[ENA]
¢þ
>WENV183510047
OMHL01004176
[OMHL] human oral metagenome; human oral
20
93
+
His
GTG
[ENA]
¢þ
>WENV183509980
OMHL01000218
[OMHL] human oral metagenome; human oral
22
98
+
Pro
TGG
[ENA]
¢þ
>WENV183510031
OMHL01003075
[OMHL] human oral metagenome; human oral
41
129
+
Ser
CGA
[ENA]
¢þ
>WENV183510026
OMHL01002851
[OMHL] human oral metagenome; human oral
59
132
+
Gly
GCC
[ENA]
¢þ
>WENV183510023
OMHL01002711
[OMHL] human oral metagenome; human oral
59
145
+
Ser
CGA
[ENA]
¢þ
>WENV183510051
OMHL01004664
[OMHL] human oral metagenome; human oral
61
136
+
fMet
CAT
[ENA]
¢þ
>WENV183509990
OMHL01000456
[OMHL] human oral metagenome; human oral
67
152
+
Leu
TAA
[ENA]
¢þ
>WENV183509999
OMHL01000975
[OMHL] human oral metagenome; human oral
82
7
-
Asn
GTT
[ENA]
¢þ
>WENV183510049
OMHL01004358
[OMHL] human oral metagenome; human oral
86
12
-
Gln
CTG
[ENA]
¢þ
>WENV183510040
OMHL01003411
[OMHL] human oral metagenome; human oral
90
4
-
Leu
CAA
[ENA]
¢þ
>WENV183510079
OMHL01007783
[OMHL] human oral metagenome; human oral
91
166
+
Arg
CCT
[ENA]
¢þ
>WENV183510082
OMHL01007888
[OMHL] human oral metagenome; human oral
99
189
+
Ser
GCT
[ENA]
¢þ
>WENV183510034
OMHL01003146
[OMHL] human oral metagenome; human oral
106
192
+
Leu
TAA
[ENA]
¢þ
>WENV183510103
OMHL01011298
[OMHL] human oral metagenome; human oral
113
38
-
Gln
CTG
[ENA]
¢þ
>WENV183510096
OMHL01010326
[OMHL] human oral metagenome; human oral
116
187
+
Gln
TTG
[ENA]
¢þ
>WENV183509981
OMHL01000218
[OMHL] human oral metagenome; human oral
116
190
+
Ala
TGC
[ENA]
¢þ
>WENV183510080
OMHL01007855
[OMHL] human oral metagenome; human oral
118
192
+
Ile
GAT
[ENA]
¢þ
>WENV183510043
OMHL01003714
[OMHL] human oral metagenome; human oral
123
194
+
Cys
GCA
[ENA]
¢þ
>WENV183510066
OMHL01006077
[OMHL] human oral metagenome; human oral
125
51
-
Gln
CTG
[ENA]
¢þ
>WENV183510039
OMHL01003374
[OMHL] human oral metagenome; human oral
128
55
-
Gln
TTG
[ENA]
¢þ
>WENV183510010
OMHL01001171
[OMHL] human oral metagenome; human oral
135
61
-
Gln
TTG
[ENA]
¢þ
>WENV183510067
OMHL01006122
[OMHL] human oral metagenome; human oral
148
221
+
Asn
GTT
[ENA]
¢þ
>WENV183510059
OMHL01005037
[OMHL] human oral metagenome; human oral
152
65
-
Ser
TGA
[ENA]
¢þ
>WENV183510069
OMHL01006632
[OMHL] human oral metagenome; human oral
154
239
+
Leu
TAA
[ENA]
¢þ
>WENV183510052
OMHL01004664
[OMHL] human oral metagenome; human oral
154
239
+
Tyr
GTA
[ENA]
¢þ
>WENV183510027
OMHL01002851
[OMHL] human oral metagenome; human oral
158
244
+
Leu
TAA
[ENA]
¢þ
>WENV183510073
OMHL01006922
[OMHL] human oral metagenome; human oral
159
242
+
Tyr
GTA
[ENA]
¢þ
>WENV183510061
OMHL01005410
[OMHL] human oral metagenome; human oral
167
92
-
Trp
CCA
[ENA]
¢þ
>WENV183510089
OMHL01009469
[OMHL] human oral metagenome; human oral
167
242
+
Ala
GGC
[ENA]
¢þ
>WENV183510070
OMHL01006696
[OMHL] human oral metagenome; human oral
168
242
+
Asn
GTT
[ENA]
¢þ
>WENV183510011
OMHL01001364
[OMHL] human oral metagenome; human oral
173
245
+
Met
CAT
[ENA]
¢þ
>WENV183510041
OMHL01003456
[OMHL] human oral metagenome; human oral
177
250
+
Val
TAC
[ENA]
¢þ
>WENV183510099
OMHL01010631
[OMHL] human oral metagenome; human oral
188
260
+
Pro
TGG
[ENA]
¢þ
>WENV183509977
OMHL01000141
[OMHL] human oral metagenome; human oral
195
106
-
Ser
TGA
[ENA]
¢þ
>WENV183509983
OMHL01000228
[OMHL] human oral metagenome; human oral
196
120
-
Pro
CGG
[ENA]
¢þ
>WENV183510086
OMHL01008548
[OMHL] human oral metagenome; human oral
198
289
+
Ser
GCT
[ENA]
¢þ
>WENV183510095
OMHL01010163
[OMHL] human oral metagenome; human oral
200
116
-
Leu
TAG
[ENA]
¢þ
>WENV183510048
OMHL01004176
[OMHL] human oral metagenome; human oral
209
283
+
His
GTG
[ENA]
¢þ
>WENV183510038
OMHL01003374
[OMHL] human oral metagenome; human oral
214
140
-
His
GTG
[ENA]
¢þ
>WENV183510054
OMHL01004731
[OMHL] human oral metagenome; human oral
224
149
-
Ile
GAT
[ENA]
¢þ
>WENV183510056
OMHL01004909
[OMHL] human oral metagenome; human oral
231
158
-
Val
GAC
[ENA]
¢þ
>WENV183510081
OMHL01007855
[OMHL] human oral metagenome; human oral
232
306
+
Ala
TGC
[ENA]
¢þ
>WENV183510024
OMHL01002711
[OMHL] human oral metagenome; human oral
237
325
+
Ser
GGA
[ENA]
¢þ
>WENV183510097
OMHL01010326
[OMHL] human oral metagenome; human oral
238
314
+
Asp
GTC
[ENA]
¢þ
>WENV183510053
OMHL01004664
[OMHL] human oral metagenome; human oral
242
318
+
Met
CAT
[ENA]
¢þ
>WENV183509988
OMHL01000429
[OMHL] human oral metagenome; human oral
246
170
-
Val
GAC
[ENA]
¢þ
>WENV183510090
OMHL01009509
[OMHL] human oral metagenome; human oral
248
320
+
Gln
CTG
[ENA]
¢þ
>WENV183510074
OMHL01006922
[OMHL] human oral metagenome; human oral
254
328
+
Asp
GTC
[ENA]
¢þ
>WENV183510068
OMHL01006235
[OMHL] human oral metagenome; human oral
257
330
+
Gly
CCC
[ENA]
¢þ
>WENV183510094
OMHL01009961
[OMHL] human oral metagenome; human oral
259
177
-
Leu
TAA
[ENA]
¢þ
>WENV183510009
OMHL01001171
[OMHL] human oral metagenome; human oral
260
177
-
Leu
TAG
[ENA]
¢þ
>WENV183510044
OMHL01003796
[OMHL] human oral metagenome; human oral
265
349
+
Leu
CAG
[ENA]
¢þ
>WENV183510063
OMHL01005603
[OMHL] human oral metagenome; human oral
279
366
+
Leu
TAA
[ENA]
¢þ
>WENV183510087
OMHL01008548
[OMHL] human oral metagenome; human oral
291
364
+
Arg
ACG
[ENA]
¢þ
>WENV183510075
OMHL01007066
[OMHL] human oral metagenome; human oral
297
222
-
Asn
GTT
[ENA]
¢þ
>WENV183510037
OMHL01003374
[OMHL] human oral metagenome; human oral
297
225
-
Trp
CCA
[ENA]
¢þ
>WENV183510100
OMHL01010741
[OMHL] human oral metagenome; human oral
301
229
-
Gln
TTG
[ENA]
¢þ
>WENV183509976
OMHL01000141
[OMHL] human oral metagenome; human oral
305
218
-
Ser
CGA
[ENA]
¢þ
>WENV183510055
OMHL01004909
[OMHL] human oral metagenome; human oral
305
232
-
Gly
GCC
[ENA]
¢þ
>WENV183510057
OMHL01004920
[OMHL] human oral metagenome; human oral
311
401
+
Ser
GGA
[ENA]
¢þ
>WENV183510088
OMHL01008935
[OMHL] human oral metagenome; human oral
312
387
+
Lys
CTT
[ENA]
¢þ
>WENV183510101
OMHL01010763
[OMHL] human oral metagenome; human oral
312
398
+
Ser
GGA
[ENA]
¢þ
>WENV183509984
OMHL01000265
[OMHL] human oral metagenome; human oral
313
237
-
Arg
GCG
[ENA]
¢þ
>WENV183510102
OMHL01010882
[OMHL] human oral metagenome; human oral
315
389
+
Met
CAT
[ENA]
¢þ
>WENV183510065
OMHL01005808
[OMHL] human oral metagenome; human oral
318
243
-
Gln
TTG
[ENA]
¢þ
>WENV183510085
OMHL01008545
[OMHL] human oral metagenome; human oral
320
246
-
Met
CAT
[ENA]
¢þ
>WENV183510014
OMHL01001652
[OMHL] human oral metagenome; human oral
322
399
+
Asp
GTC
[ENA]
¢þ
>WENV183510035
OMHL01003146
[OMHL] human oral metagenome; human oral
329
414
+
Leu
CAG
[ENA]
¢þ
>WENV183510029
OMHL01003030
[OMHL] human oral metagenome; human oral
341
268
-
Lys
CTT
[ENA]
¢þ
>WENV183510008
OMHL01001171
[OMHL] human oral metagenome; human oral
351
276
-
Thr
TGT
[ENA]
¢þ
>WENV183510098
OMHL01010326
[OMHL] human oral metagenome; human oral
373
448
+
Pro
TGG
[ENA]
¢þ
>WENV183510045
OMHL01004042
[OMHL] human oral metagenome; human oral
374
461
+
Ser
GCT
[ENA]
¢þ
>WENV183510092
OMHL01009810
[OMHL] human oral metagenome; human oral
380
466
+
Leu
CAA
[ENA]
¢þ
>WENV183510076
OMHL01007109
[OMHL] human oral metagenome; human oral
384
457
+
Thr
CGT
[ENA]
¢þ
>WENV183510091
OMHL01009509
[OMHL] human oral metagenome; human oral
393
467
+
Glu
CTC
[ENA]
¢þ
>WENV183510093
OMHL01009961
[OMHL] human oral metagenome; human oral
404
313
-
Ile
TAT
[ENA]
¢þ
>WENV183510021
OMHL01002625
[OMHL] human oral metagenome; human oral
410
482
+
His
GTG
[ENA]
¢þ
>WENV183510071
OMHL01006887
[OMHL] human oral metagenome; human oral
422
509
+
Ser
GCT
[ENA]
¢þ
>WENV183510084
OMHL01008545
[OMHL] human oral metagenome; human oral
431
358
-
Thr
GGT
[ENA]
¢þ
>WENV183510007
OMHL01001171
[OMHL] human oral metagenome; human oral
436
360
-
Asp
GTC
[ENA]
¢þ
>WENV183510077
OMHL01007379
[OMHL] human oral metagenome; human oral
457
529
+
Gln
CTG
[ENA]
¢þ
>WENV183510015
OMHL01001652
[OMHL] human oral metagenome; human oral
474
549
+
Thr
CGT
[ENA]
¢þ
>WENV183510046
OMHL01004042
[OMHL] human oral metagenome; human oral
479
551
+
Glu
CTC
[ENA]
¢þ
>WENV183510032
OMHL01003136
[OMHL] human oral metagenome; human oral
498
422
-
Lys
TTT
[ENA]
¢þ
>WENV183510036
OMHL01003146
[OMHL] human oral metagenome; human oral
516
601
+
Leu
GAG
[ENA]
¢þ
>WENV183510006
OMHL01001171
[OMHL] human oral metagenome; human oral
520
445
-
Val
TAC
[ENA]
¢þ
>WENV183510072
OMHL01006887
[OMHL] human oral metagenome; human oral
540
612
+
Glu
CTC
[ENA]
¢þ
>WENV183510030
OMHL01003035
[OMHL] human oral metagenome; human oral
545
637
+
Ser
GCT
[ENA]
¢þ
>WENV183510062
OMHL01005527
[OMHL] human oral metagenome; human oral
551
626
+
Asn
GTT
[ENA]
¢þ
>WENV183509996
OMHL01000675
[OMHL] human oral metagenome; human oral
553
629
+
Arg
CCT
[ENA]
¢þ
>WENV183510083
OMHL01008254
[OMHL] human oral metagenome; human oral
557
484
-
Arg
CCG
[ENA]
¢þ
>WENV183510064
OMHL01005766
[OMHL] human oral metagenome; human oral
563
487
-
Arg
GCG
[ENA]
¢þ
>WENV183510060
OMHL01005129
[OMHL] human oral metagenome; human oral
564
639
+
Val
TAC
[ENA]
¢þ
>WENV183510050
OMHL01004601
[OMHL] human oral metagenome; human oral
567
494
-
Gly
CCC
[ENA]
¢þ
>WENV183510016
OMHL01001685
[OMHL] human oral metagenome; human oral
568
492
-
Ile
GAT
[ENA]
¢þ
>WENV183510022
OMHL01002625
[OMHL] human oral metagenome; human oral
575
649
+
Arg
TCG
[ENA]
¢þ
>WENV183510078
OMHL01007779
[OMHL] human oral metagenome; human oral
576
504
-
Glu
TTC
[ENA]
¢þ
>WENV183510042
OMHL01003476
[OMHL] human oral metagenome; human oral
578
652
+
Gly
TCC
[ENA]
¢þ
>WENV183509993
OMHL01000601
[OMHL] human oral metagenome; human oral
592
665
+
Arg
TCT
[ENA]
¢þ
>WENV183510005
OMHL01001171
[OMHL] human oral metagenome; human oral
599
525
-
Glu
TTC
[ENA]
¢þ
>WENV183509989
OMHL01000453
[OMHL] human oral metagenome; human oral
602
679
+
fMet
CAT
[ENA]
¢þ
>WENV183510058
OMHL01004985
[OMHL] human oral metagenome; human oral
610
528
-
Leu
CAA
[ENA]
¢þ
>WENV183510012
OMHL01001491
[OMHL] human oral metagenome; human oral
616
530
-
Leu
CAG
[ENA]
¢þ
>WENV183509992
OMHL01000578
[OMHL] human oral metagenome; human oral
658
584
-
Trp
CCA
[ENA]
¢þ
>WENV183510004
OMHL01001171
[OMHL] human oral metagenome; human oral
682
607
-
Lys
CTT
[ENA]
¢þ
>WENV183509974
OMHL01000131
[OMHL] human oral metagenome; human oral
729
805
+
Lys
CTT
[ENA]
¢þ
>WENV183510025
OMHL01002842
[OMHL] human oral metagenome; human oral
754
678
-
Arg
CCG
[ENA]
¢þ
>WENV183510003
OMHL01001171
[OMHL] human oral metagenome; human oral
766
691
-
Gly
TCC
[ENA]
¢þ
>WENV183510028
OMHL01002911
[OMHL] human oral metagenome; human oral
768
842
+
Pro
TGG
[ENA]
¢þ
>WENV183510020
OMHL01002478
[OMHL] human oral metagenome; human oral
792
867
+
Asp
GTC
[ENA]
¢þ
>WENV183510018
OMHL01002223
[OMHL] human oral metagenome; human oral
813
739
-
Glu
CTC
[ENA]
¢þ
>WENV183509973
OMHL01000104
[OMHL] human oral metagenome; human oral
818
734
-
Leu
TAG
[ENA]
¢þ
>WENV183510002
OMHL01001171
[OMHL] human oral metagenome; human oral
850
774
-
Pro
TGG
[ENA]
¢þ
>WENV183510019
OMHL01002285
[OMHL] human oral metagenome; human oral
852
926
+
Gly
CCC
[ENA]
¢þ
>WENV183510017
OMHL01001715
[OMHL] human oral metagenome; human oral
883
807
-
Ala
TGC
[ENA]
¢þ
>WENV183510013
OMHL01001567
[OMHL] human oral metagenome; human oral
886
810
-
Arg
CCT
[ENA]
¢þ
>WENV183510001
OMHL01001089
[OMHL] human oral metagenome; human oral
893
822
-
Val
CAC
[ENA]
¢þ
>WENV183509986
OMHL01000420
[OMHL] human oral metagenome; human oral
954
1030
+
Val
CAC
[ENA]
¢þ
>WENV183509968
OMHL01000098
[OMHL] human oral metagenome; human oral
958
1045
+
Leu
GAG
[ENA]
¢þ
>WENV183509975
OMHL01000131
[OMHL] human oral metagenome; human oral
993
918
-
Arg
TCT
[ENA]
¢þ
>WENV183510000
OMHL01001008
[OMHL] human oral metagenome; human oral
994
921
-
Phe
GAA
[ENA]
¢þ
>WENV183509987
OMHL01000420
[OMHL] human oral metagenome; human oral
1049
1125
+
Ala
GGC
[ENA]
¢þ
>WENV183509995
OMHL01000673
[OMHL] human oral metagenome; human oral
1090
1016
-
Ala
TGC
[ENA]
¢þ
>WENV183509962
OMHL01000022
[OMHL] human oral metagenome; human oral
1094
1019
-
Thr
GGT
[ENA]
¢þ
>WENV183509985
OMHL01000373
[OMHL] human oral metagenome; human oral
1104
1031
-
Lys
TTT
[ENA]
¢þ
>WENV183509978
OMHL01000165
[OMHL] human oral metagenome; human oral
1132
1221
+
Ser
GGA
[ENA]
¢þ
>WENV183509969
OMHL01000098
[OMHL] human oral metagenome; human oral
1135
1208
+
Cys
GCA
[ENA]
¢þ
>WENV183509994
OMHL01000673
[OMHL] human oral metagenome; human oral
1252
1178
-
Ile
GAT
[ENA]
¢þ
>WENV183509998
OMHL01000951
[OMHL] human oral metagenome; human oral
1264
1189
-
Thr
GGT
[ENA]
¢þ
>WENV183509970
OMHL01000098
[OMHL] human oral metagenome; human oral
1267
1352
+
Leu
TAA
[ENA]
¢þ
>WENV183509997
OMHL01000736
[OMHL] human oral metagenome; human oral
1268
1195
-
Ala
TGC
[ENA]
¢þ
>WENV183509991
OMHL01000511
[OMHL] human oral metagenome; human oral
1348
1274
-
Gln
CTG
[ENA]
¢þ
>WENV183509979
OMHL01000208
[OMHL] human oral metagenome; human oral
1568
1643
+
Ile2
CAT
[ENA]
¢þ
>WENV183509961
OMHL01000022
[OMHL] human oral metagenome; human oral
1644
1560
-
Tyr
GTA
[ENA]
¢þ
>WENV183509963
OMHL01000035
[OMHL] human oral metagenome; human oral
1754
1843
+
Ser
TGA
[ENA]
¢þ
>WENV183509960
OMHL01000022
[OMHL] human oral metagenome; human oral
1768
1692
-
Thr
TGT
[ENA]
¢þ
>WENV183509972
OMHL01000101
[OMHL] human oral metagenome; human oral
1898
1824
-
Gly
TCC
[ENA]
¢þ
>WENV183509971
OMHL01000101
[OMHL] human oral metagenome; human oral
2016
2092
+
His
GTG
[ENA]
¢þ
>WENV183509982
OMHL01000225
[OMHL] human oral metagenome; human oral
2083
2159
+
Asn
GTT
[ENA]
¢þ
>WENV183509966
OMHL01000044
[OMHL] human oral metagenome; human oral
2555
2629
+
Glu
TTC
[ENA]
¢þ
>WENV183509965
OMHL01000040
[OMHL] human oral metagenome; human oral
2835
2911
+
Met
CAT
[ENA]
¢þ
>WENV183509967
OMHL01000050
[OMHL] human oral metagenome; human oral
3056
3131
+
Phe
GAA
[ENA]
¢þ
>WENV183509964
OMHL01000035
[OMHL] human oral metagenome; human oral
3833
3925
+
Ser
GCT
[ENA]
¢þ
>WENV183509959
OMHL01000015
[OMHL] human oral metagenome; human oral
3941
4016
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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