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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OMHN] human oral metagenome; human oral
HIT:
142 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183510272
OMHN01001514
[OMHN] human oral metagenome; human oral
26
98
+
Met
CAT
[ENA]
¢þ
>WENV183510296
OMHN01002220
[OMHN] human oral metagenome; human oral
45
118
+
Ala
GGC
[ENA]
¢þ
>WENV183510277
OMHN01001640
[OMHN] human oral metagenome; human oral
65
148
+
Leu
TAG
[ENA]
¢þ
>WENV183510329
OMHN01006248
[OMHN] human oral metagenome; human oral
99
174
+
Thr
CGT
[ENA]
¢þ
>WENV183510321
OMHN01004782
[OMHN] human oral metagenome; human oral
104
27
-
fMet
CAT
[ENA]
¢þ
>WENV183510273
OMHN01001514
[OMHN] human oral metagenome; human oral
122
195
+
Trp
CCA
[ENA]
¢þ
>WENV183510345
OMHN01007209
[OMHN] human oral metagenome; human oral
124
50
-
Val
GAC
[ENA]
¢þ
>WENV183510334
OMHN01006655
[OMHN] human oral metagenome; human oral
124
196
+
Gln
CTG
[ENA]
¢þ
>WENV183510367
OMHN01010304
[OMHN] human oral metagenome; human oral
126
51
-
Trp
CCA
[ENA]
¢þ
>WENV183510304
OMHN01002770
[OMHN] human oral metagenome; human oral
126
53
-
Gly
GCC
[ENA]
¢þ
>WENV183510339
OMHN01006703
[OMHN] human oral metagenome; human oral
134
220
+
Leu
TAA
[ENA]
¢þ
>WENV183510332
OMHN01006522
[OMHN] human oral metagenome; human oral
141
68
-
Asn
GTT
[ENA]
¢þ
>WENV183510374
OMHN01011524
[OMHN] human oral metagenome; human oral
141
217
+
Ile
GAT
[ENA]
¢þ
>WENV183510365
OMHN01010004
[OMHN] human oral metagenome; human oral
143
68
-
fMet
CAT
[ENA]
¢þ
>WENV183510276
OMHN01001627
[OMHN] human oral metagenome; human oral
144
69
-
Pro
GGG
[ENA]
¢þ
>WENV183510299
OMHN01002482
[OMHN] human oral metagenome; human oral
147
221
+
Val
CAC
[ENA]
¢þ
>WENV183510316
OMHN01003967
[OMHN] human oral metagenome; human oral
156
84
-
Gly
TCC
[ENA]
¢þ
>WENV183510355
OMHN01008924
[OMHN] human oral metagenome; human oral
157
244
+
Ser
GGA
[ENA]
¢þ
>WENV183510282
OMHN01001643
[OMHN] human oral metagenome; human oral
158
232
+
Glu
CTC
[ENA]
¢þ
>WENV183510278
OMHN01001640
[OMHN] human oral metagenome; human oral
163
235
+
Thr
TGT
[ENA]
¢þ
>WENV183510330
OMHN01006369
[OMHN] human oral metagenome; human oral
165
90
-
Asn
GTT
[ENA]
¢þ
>WENV183510360
OMHN01009444
[OMHN] human oral metagenome; human oral
166
78
-
Ser
GCT
[ENA]
¢þ
>WENV183510306
OMHN01002932
[OMHN] human oral metagenome; human oral
170
243
+
Pro
CGG
[ENA]
¢þ
>WENV183510268
OMHN01001356
[OMHN] human oral metagenome; human oral
182
109
-
Pro
CGG
[ENA]
¢þ
>WENV183510372
OMHN01011241
[OMHN] human oral metagenome; human oral
189
99
-
Ser
GGA
[ENA]
¢þ
>WENV183510340
OMHN01006998
[OMHN] human oral metagenome; human oral
193
268
+
Arg
TCT
[ENA]
¢þ
>WENV183510344
OMHN01007209
[OMHN] human oral metagenome; human oral
196
125
-
Cys
GCA
[ENA]
¢þ
>WENV183510285
OMHN01001781
[OMHN] human oral metagenome; human oral
196
270
+
Ile
GAT
[ENA]
¢þ
>WENV183510307
OMHN01003124
[OMHN] human oral metagenome; human oral
198
124
-
Asn
GTT
[ENA]
¢þ
>WENV183510289
OMHN01001892
[OMHN] human oral metagenome; human oral
206
131
-
Asp
GTC
[ENA]
¢þ
>WENV183510260
OMHN01001083
[OMHN] human oral metagenome; human oral
226
152
-
Val
CAC
[ENA]
¢þ
>WENV183510315
OMHN01003967
[OMHN] human oral metagenome; human oral
233
161
-
Val
TAC
[ENA]
¢þ
>WENV183510326
OMHN01005422
[OMHN] human oral metagenome; human oral
233
308
+
Arg
ACG
[ENA]
¢þ
>WENV183510279
OMHN01001640
[OMHN] human oral metagenome; human oral
238
309
+
Gly
GCC
[ENA]
¢þ
>WENV183510293
OMHN01002020
[OMHN] human oral metagenome; human oral
241
328
+
Ser
TGA
[ENA]
¢þ
>WENV183510364
OMHN01010004
[OMHN] human oral metagenome; human oral
242
157
-
Tyr
GTA
[ENA]
¢þ
>WENV183510322
OMHN01004941
[OMHN] human oral metagenome; human oral
266
190
-
Asn
GTT
[ENA]
¢þ
>WENV183510261
OMHN01001204
[OMHN] human oral metagenome; human oral
269
198
-
Gln
CTG
[ENA]
¢þ
>WENV183510323
OMHN01004960
[OMHN] human oral metagenome; human oral
269
199
-
Trp
CCA
[ENA]
¢þ
>WENV183510359
OMHN01009444
[OMHN] human oral metagenome; human oral
272
189
-
Ser
TGA
[ENA]
¢þ
>WENV183510377
OMHN01011651
[OMHN] human oral metagenome; human oral
272
345
+
Arg
ACG
[ENA]
¢þ
>WENV183510368
OMHN01010626
[OMHN] human oral metagenome; human oral
272
348
+
Lys
CTT
[ENA]
¢þ
>WENV183510333
OMHN01006625
[OMHN] human oral metagenome; human oral
277
203
-
Thr
TGT
[ENA]
¢þ
>WENV183510375
OMHN01011524
[OMHN] human oral metagenome; human oral
278
353
+
Ala
TGC
[ENA]
¢þ
>WENV183510335
OMHN01006655
[OMHN] human oral metagenome; human oral
284
357
+
Glu
CTC
[ENA]
¢þ
>WENV183510286
OMHN01001781
[OMHN] human oral metagenome; human oral
291
366
+
Ala
TGC
[ENA]
¢þ
>WENV183510354
OMHN01008907
[OMHN] human oral metagenome; human oral
303
229
-
Gln
TTG
[ENA]
¢þ
>WENV183510343
OMHN01007209
[OMHN] human oral metagenome; human oral
305
231
-
Gly
GCC
[ENA]
¢þ
>WENV183510267
OMHN01001356
[OMHN] human oral metagenome; human oral
305
378
+
Phe
GAA
[ENA]
¢þ
>WENV183510300
OMHN01002636
[OMHN] human oral metagenome; human oral
311
387
+
His
GTG
[ENA]
¢þ
>WENV183510292
OMHN01001956
[OMHN] human oral metagenome; human oral
315
241
-
Met
CAT
[ENA]
¢þ
>WENV183510361
OMHN01009564
[OMHN] human oral metagenome; human oral
315
391
+
Pro
GGG
[ENA]
¢þ
>WENV183510363
OMHN01009920
[OMHN] human oral metagenome; human oral
317
241
-
His
GTG
[ENA]
¢þ
>WENV183510280
OMHN01001640
[OMHN] human oral metagenome; human oral
317
401
+
Leu
TAA
[ENA]
¢þ
>WENV183510357
OMHN01009142
[OMHN] human oral metagenome; human oral
322
232
-
Ser
GCT
[ENA]
¢þ
>WENV183510371
OMHN01011220
[OMHN] human oral metagenome; human oral
333
248
-
Leu
GAG
[ENA]
¢þ
>WENV183510239
OMHN01000115
[OMHN] human oral metagenome; human oral
333
262
-
Gly
CCC
[ENA]
¢þ
>WENV183510324
OMHN01005009
[OMHN] human oral metagenome; human oral
339
255
-
Leu
TAG
[ENA]
¢þ
>WENV183510350
OMHN01008632
[OMHN] human oral metagenome; human oral
344
418
+
Glu
CTC
[ENA]
¢þ
>WENV183510245
OMHN01000361
[OMHN] human oral metagenome; human oral
347
419
+
Glu
TTC
[ENA]
¢þ
>WENV183510313
OMHN01003902
[OMHN] human oral metagenome; human oral
351
277
-
Asp
GTC
[ENA]
¢þ
>WENV183510376
OMHN01011535
[OMHN] human oral metagenome; human oral
356
280
-
Pro
GGG
[ENA]
¢þ
>WENV183510356
OMHN01009118
[OMHN] human oral metagenome; human oral
368
291
-
Arg
ACG
[ENA]
¢þ
>WENV183510358
OMHN01009179
[OMHN] human oral metagenome; human oral
369
445
+
Val
GAC
[ENA]
¢þ
>WENV183510331
OMHN01006522
[OMHN] human oral metagenome; human oral
414
488
+
Ile2
CAT
[ENA]
¢þ
>WENV183510320
OMHN01004711
[OMHN] human oral metagenome; human oral
419
492
+
Thr
CGT
[ENA]
¢þ
>WENV183510353
OMHN01008907
[OMHN] human oral metagenome; human oral
428
345
-
Leu
TAG
[ENA]
¢þ
>WENV183510349
OMHN01007750
[OMHN] human oral metagenome; human oral
428
353
-
Val
TAC
[ENA]
¢þ
>WENV183510281
OMHN01001640
[OMHN] human oral metagenome; human oral
428
517
+
Ser
CGA
[ENA]
¢þ
>WENV183510291
OMHN01001956
[OMHN] human oral metagenome; human oral
429
354
-
Thr
GGT
[ENA]
¢þ
>WENV183510370
OMHN01011220
[OMHN] human oral metagenome; human oral
443
357
-
Leu
TAA
[ENA]
¢þ
>WENV183510369
OMHN01010859
[OMHN] human oral metagenome; human oral
446
372
-
Met
CAT
[ENA]
¢þ
>WENV183510346
OMHN01007244
[OMHN] human oral metagenome; human oral
453
381
-
Arg
CCT
[ENA]
¢þ
>WENV183510251
OMHN01000483
[OMHN] human oral metagenome; human oral
454
380
-
His
GTG
[ENA]
¢þ
>WENV183510342
OMHN01007209
[OMHN] human oral metagenome; human oral
456
530
+
Val
CAC
[ENA]
¢þ
>WENV183510348
OMHN01007700
[OMHN] human oral metagenome; human oral
465
390
-
Val
TAC
[ENA]
¢þ
>WENV183510362
OMHN01009713
[OMHN] human oral metagenome; human oral
467
544
+
Arg
CCT
[ENA]
¢þ
>WENV183510338
OMHN01006690
[OMHN] human oral metagenome; human oral
476
400
-
Met
CAT
[ENA]
¢þ
>WENV183510328
OMHN01005971
[OMHN] human oral metagenome; human oral
477
403
-
Arg
CCG
[ENA]
¢þ
>WENV183510373
OMHN01011297
[OMHN] human oral metagenome; human oral
477
404
-
Pro
CGG
[ENA]
¢þ
>WENV183510257
OMHN01001083
[OMHN] human oral metagenome; human oral
482
555
+
Gly
GCC
[ENA]
¢þ
>WENV183510351
OMHN01008781
[OMHN] human oral metagenome; human oral
489
575
+
Leu
CAG
[ENA]
¢þ
>WENV183510352
OMHN01008907
[OMHN] human oral metagenome; human oral
516
441
-
Lys
TTT
[ENA]
¢þ
>WENV183510312
OMHN01003902
[OMHN] human oral metagenome; human oral
520
447
-
Glu
TTC
[ENA]
¢þ
>WENV183510308
OMHN01003233
[OMHN] human oral metagenome; human oral
533
609
+
Pro
TGG
[ENA]
¢þ
>WENV183510366
OMHN01010104
[OMHN] human oral metagenome; human oral
538
464
-
Pro
TGG
[ENA]
¢þ
>WENV183510327
OMHN01005930
[OMHN] human oral metagenome; human oral
549
465
-
Leu
TAA
[ENA]
¢þ
>WENV183510341
OMHN01007002
[OMHN] human oral metagenome; human oral
556
632
+
Leu
CAA
[ENA]
¢þ
>WENV183510337
OMHN01006690
[OMHN] human oral metagenome; human oral
558
483
-
Thr
GGT
[ENA]
¢þ
>WENV183510258
OMHN01001083
[OMHN] human oral metagenome; human oral
559
631
+
Val
GAC
[ENA]
¢þ
>WENV183510298
OMHN01002424
[OMHN] human oral metagenome; human oral
565
483
-
Leu
TAG
[ENA]
¢þ
>WENV183510319
OMHN01004670
[OMHN] human oral metagenome; human oral
574
500
-
Arg
CCG
[ENA]
¢þ
>WENV183510318
OMHN01004446
[OMHN] human oral metagenome; human oral
590
664
+
Ile
GAT
[ENA]
¢þ
>WENV183510253
OMHN01000790
[OMHN] human oral metagenome; human oral
591
516
-
Leu
TAA
[ENA]
¢þ
>WENV183510347
OMHN01007700
[OMHN] human oral metagenome; human oral
602
527
-
Lys
CTT
[ENA]
¢þ
>WENV183510305
OMHN01002797
[OMHN] human oral metagenome; human oral
632
708
+
Arg
CCT
[ENA]
¢þ
>WENV183510259
OMHN01001083
[OMHN] human oral metagenome; human oral
635
708
+
Gly
GCC
[ENA]
¢þ
>WENV183510290
OMHN01001956
[OMHN] human oral metagenome; human oral
639
556
-
Tyr
GTA
[ENA]
¢þ
>WENV183510336
OMHN01006690
[OMHN] human oral metagenome; human oral
643
568
-
fMet
CAT
[ENA]
¢þ
>WENV183510250
OMHN01000483
[OMHN] human oral metagenome; human oral
643
570
-
His
GTG
[ENA]
¢þ
>WENV183510314
OMHN01003917
[OMHN] human oral metagenome; human oral
656
729
+
Gly
CCC
[ENA]
¢þ
>WENV183510311
OMHN01003854
[OMHN] human oral metagenome; human oral
673
597
-
fMet
CAT
[ENA]
¢þ
>WENV183510303
OMHN01002744
[OMHN] human oral metagenome; human oral
698
771
+
Pro
GGG
[ENA]
¢þ
>WENV183510325
OMHN01005044
[OMHN] human oral metagenome; human oral
718
642
-
Met
CAT
[ENA]
¢þ
>WENV183510275
OMHN01001601
[OMHN] human oral metagenome; human oral
729
815
+
Leu
CAA
[ENA]
¢þ
>WENV183510297
OMHN01002290
[OMHN] human oral metagenome; human oral
751
824
+
Trp
CCA
[ENA]
¢þ
>WENV183510317
OMHN01004150
[OMHN] human oral metagenome; human oral
779
703
-
Met
CAT
[ENA]
¢þ
>WENV183510247
OMHN01000430
[OMHN] human oral metagenome; human oral
782
853
+
Gln
TTG
[ENA]
¢þ
>WENV183510302
OMHN01002721
[OMHN] human oral metagenome; human oral
783
854
+
Cys
GCA
[ENA]
¢þ
>WENV183510284
OMHN01001668
[OMHN] human oral metagenome; human oral
811
897
+
Leu
GAG
[ENA]
¢þ
>WENV183510249
OMHN01000455
[OMHN] human oral metagenome; human oral
825
753
-
Glu
CTC
[ENA]
¢þ
>WENV183510309
OMHN01003305
[OMHN] human oral metagenome; human oral
849
775
-
Trp
CCA
[ENA]
¢þ
>WENV183510310
OMHN01003348
[OMHN] human oral metagenome; human oral
850
924
+
Pro
TGG
[ENA]
¢þ
>WENV183510283
OMHN01001652
[OMHN] human oral metagenome; human oral
871
797
-
Asp
GTC
[ENA]
¢þ
>WENV183510287
OMHN01001850
[OMHN] human oral metagenome; human oral
897
972
+
His
GTG
[ENA]
¢þ
>WENV183510301
OMHN01002636
[OMHN] human oral metagenome; human oral
905
979
+
Gly
TCC
[ENA]
¢þ
>WENV183510255
OMHN01000912
[OMHN] human oral metagenome; human oral
911
837
-
Glu
TTC
[ENA]
¢þ
>WENV183510256
OMHN01001050
[OMHN] human oral metagenome; human oral
920
1005
+
Ser
TGA
[ENA]
¢þ
>WENV183510294
OMHN01002020
[OMHN] human oral metagenome; human oral
932
1024
+
Ser
GCT
[ENA]
¢þ
>WENV183510248
OMHN01000455
[OMHN] human oral metagenome; human oral
943
856
-
Ser
GCT
[ENA]
¢þ
>WENV183510288
OMHN01001850
[OMHN] human oral metagenome; human oral
975
1050
+
Trp
CCA
[ENA]
¢þ
>WENV183510243
OMHN01000297
[OMHN] human oral metagenome; human oral
1017
1090
+
Lys
CTT
[ENA]
¢þ
>WENV183510262
OMHN01001214
[OMHN] human oral metagenome; human oral
1055
982
-
Lys
TTT
[ENA]
¢þ
>WENV183510270
OMHN01001380
[OMHN] human oral metagenome; human oral
1057
983
-
Ala
TGC
[ENA]
¢þ
>WENV183510271
OMHN01001504
[OMHN] human oral metagenome; human oral
1108
1034
-
Gln
CTG
[ENA]
¢þ
>WENV183510264
OMHN01001289
[OMHN] human oral metagenome; human oral
1111
1037
-
Ala
TGC
[ENA]
¢þ
>WENV183510295
OMHN01002026
[OMHN] human oral metagenome; human oral
1152
1079
-
Phe
GAA
[ENA]
¢þ
>WENV183510274
OMHN01001575
[OMHN] human oral metagenome; human oral
1188
1116
-
Thr
GGT
[ENA]
¢þ
>WENV183510269
OMHN01001380
[OMHN] human oral metagenome; human oral
1206
1132
-
Ile
GAT
[ENA]
¢þ
>WENV183510263
OMHN01001289
[OMHN] human oral metagenome; human oral
1285
1211
-
Ile
GAT
[ENA]
¢þ
>WENV183510266
OMHN01001305
[OMHN] human oral metagenome; human oral
1332
1259
-
Glu
CTC
[ENA]
¢þ
>WENV183510265
OMHN01001305
[OMHN] human oral metagenome; human oral
1428
1356
-
Gln
CTG
[ENA]
¢þ
>WENV183510242
OMHN01000259
[OMHN] human oral metagenome; human oral
1529
1615
+
Ser
GGA
[ENA]
¢þ
>WENV183510238
OMHN01000110
[OMHN] human oral metagenome; human oral
1653
1577
-
Pro
CGG
[ENA]
¢þ
>WENV183510254
OMHN01000877
[OMHN] human oral metagenome; human oral
1724
1798
+
Pro
GGG
[ENA]
¢þ
>WENV183510252
OMHN01000782
[OMHN] human oral metagenome; human oral
2075
1991
-
Leu
CAG
[ENA]
¢þ
>WENV183510241
OMHN01000186
[OMHN] human oral metagenome; human oral
2203
2276
+
Arg
TCT
[ENA]
¢þ
>WENV183510244
OMHN01000350
[OMHN] human oral metagenome; human oral
2305
2380
+
Val
TAC
[ENA]
¢þ
>WENV183510246
OMHN01000367
[OMHN] human oral metagenome; human oral
2475
2549
+
Leu
CAA
[ENA]
¢þ
>WENV183510240
OMHN01000126
[OMHN] human oral metagenome; human oral
3707
3625
-
Leu
CAA
[ENA]
¢þ
>WENV183510236
OMHN01000094
[OMHN] human oral metagenome; human oral
4853
4927
+
Ile
GAT
[ENA]
¢þ
>WENV183510237
OMHN01000094
[OMHN] human oral metagenome; human oral
4936
5009
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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