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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OMHP] human oral metagenome; human oral
HIT:
99 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183510640
OMHP01007069
[OMHP] human oral metagenome; human oral
56
131
+
Thr
GGT
[ENA]
¢þ
>WENV183510584
OMHP01001096
[OMHP] human oral metagenome; human oral
74
1
-
Val
GAC
[ENA]
¢þ
>WENV183510622
OMHP01003868
[OMHP] human oral metagenome; human oral
75
2
-
Ile
GAT
[ENA]
¢þ
>WENV183510603
OMHP01002473
[OMHP] human oral metagenome; human oral
76
150
+
Val
TAC
[ENA]
¢þ
>WENV183510627
OMHP01004647
[OMHP] human oral metagenome; human oral
80
155
+
His
GTG
[ENA]
¢þ
>WENV183510600
OMHP01002345
[OMHP] human oral metagenome; human oral
81
154
+
Glu
CTC
[ENA]
¢þ
>WENV183510620
OMHP01003582
[OMHP] human oral metagenome; human oral
85
11
-
Leu
CAA
[ENA]
¢þ
>WENV183510576
OMHP01000781
[OMHP] human oral metagenome; human oral
88
13
-
Arg
CCG
[ENA]
¢þ
>WENV183510608
OMHP01002796
[OMHP] human oral metagenome; human oral
89
162
+
Arg
ACG
[ENA]
¢þ
>WENV183510629
OMHP01004729
[OMHP] human oral metagenome; human oral
92
167
+
Gly
GCC
[ENA]
¢þ
>WENV183510570
OMHP01000572
[OMHP] human oral metagenome; human oral
102
28
-
His
GTG
[ENA]
¢þ
>WENV183510637
OMHP01005993
[OMHP] human oral metagenome; human oral
103
190
+
Ser
TGA
[ENA]
¢þ
>WENV183510575
OMHP01000751
[OMHP] human oral metagenome; human oral
106
20
-
Ser
TGA
[ENA]
¢þ
>WENV183510623
OMHP01004152
[OMHP] human oral metagenome; human oral
108
183
+
Lys
TTT
[ENA]
¢þ
>WENV183510624
OMHP01004311
[OMHP] human oral metagenome; human oral
132
59
-
Arg
TCT
[ENA]
¢þ
>WENV183510583
OMHP01001096
[OMHP] human oral metagenome; human oral
148
75
-
Gly
GCC
[ENA]
¢þ
>WENV183510601
OMHP01002436
[OMHP] human oral metagenome; human oral
168
79
-
Leu
GAG
[ENA]
¢þ
>WENV183510613
OMHP01002952
[OMHP] human oral metagenome; human oral
171
247
+
Pro
GGG
[ENA]
¢þ
>WENV183510631
OMHP01005061
[OMHP] human oral metagenome; human oral
174
247
+
Pro
GGG
[ENA]
¢þ
>WENV183510639
OMHP01007007
[OMHP] human oral metagenome; human oral
175
101
-
Gly
TCC
[ENA]
¢þ
>WENV183510633
OMHP01005217
[OMHP] human oral metagenome; human oral
196
124
-
Gln
CTG
[ENA]
¢þ
>WENV183510542
OMHP01000005
[OMHP] human oral metagenome; human oral
200
125
-
Thr
TGT
[ENA]
¢þ
>WENV183510591
OMHP01001344
[OMHP] human oral metagenome; human oral
217
289
+
Gly
TCC
[ENA]
¢þ
>WENV183510636
OMHP01005840
[OMHP] human oral metagenome; human oral
219
144
-
Thr
TGT
[ENA]
¢þ
>WENV183510638
OMHP01006494
[OMHP] human oral metagenome; human oral
222
293
+
Val
CAC
[ENA]
¢þ
>WENV183510574
OMHP01000713
[OMHP] human oral metagenome; human oral
239
311
+
Gly
CCC
[ENA]
¢þ
>WENV183510585
OMHP01001109
[OMHP] human oral metagenome; human oral
243
319
+
fMet
CAT
[ENA]
¢þ
>WENV183510628
OMHP01004718
[OMHP] human oral metagenome; human oral
245
170
-
Arg
CCG
[ENA]
¢þ
>WENV183510559
OMHP01000232
[OMHP] human oral metagenome; human oral
245
170
-
Ile
GAT
[ENA]
¢þ
>WENV183510617
OMHP01003419
[OMHP] human oral metagenome; human oral
252
177
-
Asn
GTT
[ENA]
¢þ
>WENV183510612
OMHP01002898
[OMHP] human oral metagenome; human oral
258
173
-
Leu
GAG
[ENA]
¢þ
>WENV183510626
OMHP01004526
[OMHP] human oral metagenome; human oral
259
333
+
Gln
TTG
[ENA]
¢þ
>WENV183510605
OMHP01002696
[OMHP] human oral metagenome; human oral
260
334
+
Ile
GAT
[ENA]
¢þ
>WENV183510598
OMHP01002302
[OMHP] human oral metagenome; human oral
267
358
+
Ser
GCT
[ENA]
¢þ
>WENV183510632
OMHP01005200
[OMHP] human oral metagenome; human oral
281
207
-
Pro
GGG
[ENA]
¢þ
>WENV183510618
OMHP01003478
[OMHP] human oral metagenome; human oral
281
355
+
Asp
GTC
[ENA]
¢þ
>WENV183510569
OMHP01000572
[OMHP] human oral metagenome; human oral
291
218
-
His
GTG
[ENA]
¢þ
>WENV183510634
OMHP01005340
[OMHP] human oral metagenome; human oral
297
371
+
Gly
GCC
[ENA]
¢þ
>WENV183510568
OMHP01000559
[OMHP] human oral metagenome; human oral
298
369
+
Gly
CCC
[ENA]
¢þ
>WENV183510597
OMHP01002190
[OMHP] human oral metagenome; human oral
324
399
+
Asn
GTT
[ENA]
¢þ
>WENV183510577
OMHP01000813
[OMHP] human oral metagenome; human oral
326
252
-
Thr
TGT
[ENA]
¢þ
>WENV183510602
OMHP01002463
[OMHP] human oral metagenome; human oral
352
278
-
Asn
GTT
[ENA]
¢þ
>WENV183510599
OMHP01002302
[OMHP] human oral metagenome; human oral
360
433
+
Arg
ACG
[ENA]
¢þ
>WENV183510551
OMHP01000148
[OMHP] human oral metagenome; human oral
366
279
-
Ser
TGA
[ENA]
¢þ
>WENV183510606
OMHP01002696
[OMHP] human oral metagenome; human oral
371
445
+
Ala
TGC
[ENA]
¢þ
>WENV183510550
OMHP01000138
[OMHP] human oral metagenome; human oral
375
301
-
Pro
TGG
[ENA]
¢þ
>WENV183510619
OMHP01003478
[OMHP] human oral metagenome; human oral
377
450
+
Phe
GAA
[ENA]
¢þ
>WENV183510573
OMHP01000674
[OMHP] human oral metagenome; human oral
380
307
-
Arg
TCT
[ENA]
¢þ
>WENV183510625
OMHP01004459
[OMHP] human oral metagenome; human oral
388
462
+
Thr
TGT
[ENA]
¢þ
>WENV183510635
OMHP01005340
[OMHP] human oral metagenome; human oral
443
519
+
Ile2
CAT
[ENA]
¢þ
>WENV183510611
OMHP01002898
[OMHP] human oral metagenome; human oral
445
360
-
Leu
CAG
[ENA]
¢þ
>WENV183510596
OMHP01002069
[OMHP] human oral metagenome; human oral
501
427
-
Met
CAT
[ENA]
¢þ
>WENV183510592
OMHP01001410
[OMHP] human oral metagenome; human oral
502
576
+
Arg
TCT
[ENA]
¢þ
>WENV183510614
OMHP01003316
[OMHP] human oral metagenome; human oral
528
602
+
Ala
CGC
[ENA]
¢þ
>WENV183510630
OMHP01004791
[OMHP] human oral metagenome; human oral
544
454
-
Ser
GCT
[ENA]
¢þ
>WENV183510615
OMHP01003340
[OMHP] human oral metagenome; human oral
544
619
+
His
GTG
[ENA]
¢þ
>WENV183510610
OMHP01002898
[OMHP] human oral metagenome; human oral
565
477
-
Leu
TAA
[ENA]
¢þ
>WENV183510564
OMHP01000392
[OMHP] human oral metagenome; human oral
585
499
-
Ser
GGA
[ENA]
¢þ
>WENV183510621
OMHP01003855
[OMHP] human oral metagenome; human oral
603
513
-
Ser
GGA
[ENA]
¢þ
>WENV183510595
OMHP01002069
[OMHP] human oral metagenome; human oral
615
540
-
Thr
GGT
[ENA]
¢þ
>WENV183510579
OMHP01000932
[OMHP] human oral metagenome; human oral
619
544
-
Thr
CGT
[ENA]
¢þ
>WENV183510565
OMHP01000529
[OMHP] human oral metagenome; human oral
646
717
+
Gly
TCC
[ENA]
¢þ
>WENV183510616
OMHP01003340
[OMHP] human oral metagenome; human oral
655
730
+
Trp
CCA
[ENA]
¢þ
>WENV183510566
OMHP01000529
[OMHP] human oral metagenome; human oral
772
846
+
Pro
TGG
[ENA]
¢þ
>WENV183510607
OMHP01002752
[OMHP] human oral metagenome; human oral
801
874
+
Asp
GTC
[ENA]
¢þ
>WENV183510594
OMHP01002069
[OMHP] human oral metagenome; human oral
825
742
-
Tyr
GTA
[ENA]
¢þ
>WENV183510609
OMHP01002898
[OMHP] human oral metagenome; human oral
831
744
-
Leu
GAG
[ENA]
¢þ
>WENV183510604
OMHP01002541
[OMHP] human oral metagenome; human oral
838
765
-
Ala
GGC
[ENA]
¢þ
>WENV183510560
OMHP01000256
[OMHP] human oral metagenome; human oral
864
790
-
Leu
CAA
[ENA]
¢þ
>WENV183510589
OMHP01001272
[OMHP] human oral metagenome; human oral
881
953
+
Gln
TTG
[ENA]
¢þ
>WENV183510587
OMHP01001152
[OMHP] human oral metagenome; human oral
884
811
-
Asn
GTT
[ENA]
¢þ
>WENV183510593
OMHP01001843
[OMHP] human oral metagenome; human oral
1098
1024
-
Ala
TGC
[ENA]
¢þ
>WENV183510586
OMHP01001152
[OMHP] human oral metagenome; human oral
1157
1231
+
Ile2
CAT
[ENA]
¢þ
>WENV183510590
OMHP01001337
[OMHP] human oral metagenome; human oral
1196
1280
+
Leu
TAG
[ENA]
¢þ
>WENV183510588
OMHP01001206
[OMHP] human oral metagenome; human oral
1236
1309
+
Arg
CCG
[ENA]
¢þ
>WENV183510580
OMHP01000950
[OMHP] human oral metagenome; human oral
1288
1361
+
Glu
TTC
[ENA]
¢þ
>WENV183510582
OMHP01001077
[OMHP] human oral metagenome; human oral
1394
1312
-
Leu
TAA
[ENA]
¢þ
>WENV183510578
OMHP01000829
[OMHP] human oral metagenome; human oral
1397
1322
-
Val
TAC
[ENA]
¢þ
>WENV183510581
OMHP01000950
[OMHP] human oral metagenome; human oral
1416
1490
+
Asp
GTC
[ENA]
¢þ
>WENV183510571
OMHP01000598
[OMHP] human oral metagenome; human oral
1678
1605
-
Trp
CCA
[ENA]
¢þ
>WENV183510567
OMHP01000551
[OMHP] human oral metagenome; human oral
1737
1663
-
Thr
CGT
[ENA]
¢þ
>WENV183510563
OMHP01000324
[OMHP] human oral metagenome; human oral
1911
1987
+
Pro
CGG
[ENA]
¢þ
>WENV183510554
OMHP01000188
[OMHP] human oral metagenome; human oral
2084
2011
-
Ala
GGC
[ENA]
¢þ
>WENV183510553
OMHP01000170
[OMHP] human oral metagenome; human oral
2164
2091
-
Ile
GAT
[ENA]
¢þ
>WENV183510572
OMHP01000638
[OMHP] human oral metagenome; human oral
2174
2258
+
Leu
CAG
[ENA]
¢þ
>WENV183510555
OMHP01000193
[OMHP] human oral metagenome; human oral
2194
2266
+
Gln
TTG
[ENA]
¢þ
>WENV183510562
OMHP01000261
[OMHP] human oral metagenome; human oral
3120
3045
-
Ala
TGC
[ENA]
¢þ
>WENV183510561
OMHP01000261
[OMHP] human oral metagenome; human oral
3207
3131
-
Ile
GAT
[ENA]
¢þ
>WENV183510558
OMHP01000228
[OMHP] human oral metagenome; human oral
3289
3215
-
Val
CAC
[ENA]
¢þ
>WENV183510549
OMHP01000109
[OMHP] human oral metagenome; human oral
3492
3585
+
Ile
TAT
[ENA]
¢þ
>WENV183510552
OMHP01000159
[OMHP] human oral metagenome; human oral
3494
3408
-
Ser
GGA
[ENA]
¢þ
>WENV183510556
OMHP01000228
[OMHP] human oral metagenome; human oral
3545
3618
+
Gly
GCC
[ENA]
¢þ
>WENV183510557
OMHP01000228
[OMHP] human oral metagenome; human oral
3622
3694
+
Val
GAC
[ENA]
¢þ
>WENV183510547
OMHP01000095
[OMHP] human oral metagenome; human oral
3957
4043
+
Leu
GAG
[ENA]
¢þ
>WENV183510548
OMHP01000103
[OMHP] human oral metagenome; human oral
4581
4505
-
Pro
CGG
[ENA]
¢þ
>WENV183510546
OMHP01000056
[OMHP] human oral metagenome; human oral
5564
5480
-
Leu
TAG
[ENA]
¢þ
>WENV183510545
OMHP01000050
[OMHP] human oral metagenome; human oral
6015
6100
+
Tyr
GTA
[ENA]
¢þ
>WENV183510544
OMHP01000015
[OMHP] human oral metagenome; human oral
7150
7223
+
Lys
TTT
[ENA]
¢þ
>WENV183510543
OMHP01000006
[OMHP] human oral metagenome; human oral
10022
9932
-
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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