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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA gene List
[OMHT] human oral metagenome; human oral
HIT:
98 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183510915
OMHT01000758
[OMHT] human oral metagenome; human oral
20
94
+
Ala
TGC
[ENA]
¢þ
>WENV183510979
OMHT01008774
[OMHT] human oral metagenome; human oral
37
111
+
Pro
GGG
[ENA]
¢þ
>WENV183510981
OMHT01008849
[OMHT] human oral metagenome; human oral
74
164
+
Ser
GCT
[ENA]
¢þ
>WENV183510947
OMHT01004953
[OMHT] human oral metagenome; human oral
84
9
-
Pro
CGG
[ENA]
¢þ
>WENV183510933
OMHT01003373
[OMHT] human oral metagenome; human oral
86
15
-
Gln
TTG
[ENA]
¢þ
>WENV183510913
OMHT01000705
[OMHT] human oral metagenome; human oral
97
173
+
Val
TAC
[ENA]
¢þ
>WENV183510943
OMHT01004637
[OMHT] human oral metagenome; human oral
122
204
+
Leu
GAG
[ENA]
¢þ
>WENV183510921
OMHT01001850
[OMHT] human oral metagenome; human oral
124
209
+
Ser
TGA
[ENA]
¢þ
>WENV183510939
OMHT01004010
[OMHT] human oral metagenome; human oral
126
199
+
Glu
CTC
[ENA]
¢þ
>WENV183510969
OMHT01007553
[OMHT] human oral metagenome; human oral
131
206
+
Gly
GCC
[ENA]
¢þ
>WENV183510977
OMHT01008125
[OMHT] human oral metagenome; human oral
136
209
+
Glu
TTC
[ENA]
¢þ
>WENV183510956
OMHT01005190
[OMHT] human oral metagenome; human oral
140
65
-
Phe
GAA
[ENA]
¢þ
>WENV183510957
OMHT01005213
[OMHT] human oral metagenome; human oral
141
227
+
Leu
GAG
[ENA]
¢þ
>WENV183510916
OMHT01000807
[OMHT] human oral metagenome; human oral
144
215
+
Gln
TTG
[ENA]
¢þ
>WENV183510965
OMHT01007205
[OMHT] human oral metagenome; human oral
150
74
-
Ile2
CAT
[ENA]
¢þ
>WENV183510909
OMHT01000643
[OMHT] human oral metagenome; human oral
153
226
+
Ile
GAT
[ENA]
¢þ
>WENV183510948
OMHT01005019
[OMHT] human oral metagenome; human oral
167
94
-
Ala
GGC
[ENA]
¢þ
>WENV183510927
OMHT01001959
[OMHT] human oral metagenome; human oral
180
263
+
Tyr
GTA
[ENA]
¢þ
>WENV183510935
OMHT01003529
[OMHT] human oral metagenome; human oral
184
97
-
Ser
TGA
[ENA]
¢þ
>WENV183510931
OMHT01002326
[OMHT] human oral metagenome; human oral
224
138
-
Leu
TAA
[ENA]
¢þ
>WENV183510961
OMHT01005722
[OMHT] human oral metagenome; human oral
225
148
-
Glu
TTC
[ENA]
¢þ
>WENV183510974
OMHT01007771
[OMHT] human oral metagenome; human oral
232
307
+
Pro
TGG
[ENA]
¢þ
>WENV183510955
OMHT01005190
[OMHT] human oral metagenome; human oral
234
158
-
Asp
GTC
[ENA]
¢þ
>WENV183510922
OMHT01001850
[OMHT] human oral metagenome; human oral
234
322
+
Ser
GCT
[ENA]
¢þ
>WENV183510970
OMHT01007553
[OMHT] human oral metagenome; human oral
242
317
+
Asn
GTT
[ENA]
¢þ
>WENV183510967
OMHT01007303
[OMHT] human oral metagenome; human oral
248
166
-
Leu
TAG
[ENA]
¢þ
>WENV183510907
OMHT01000360
[OMHT] human oral metagenome; human oral
249
321
+
fMet
CAT
[ENA]
¢þ
>WENV183510978
OMHT01008125
[OMHT] human oral metagenome; human oral
264
338
+
Asp
GTC
[ENA]
¢þ
>WENV183510975
OMHT01007786
[OMHT] human oral metagenome; human oral
268
343
+
Glu
CTC
[ENA]
¢þ
>WENV183510936
OMHT01003765
[OMHT] human oral metagenome; human oral
293
221
-
Glu
CTC
[ENA]
¢þ
>WENV183510963
OMHT01006148
[OMHT] human oral metagenome; human oral
294
368
+
Pro
CGG
[ENA]
¢þ
>WENV183510954
OMHT01005190
[OMHT] human oral metagenome; human oral
318
243
-
Val
TAC
[ENA]
¢þ
>WENV183510971
OMHT01007553
[OMHT] human oral metagenome; human oral
320
394
+
Gln
CTG
[ENA]
¢þ
>WENV183510960
OMHT01005722
[OMHT] human oral metagenome; human oral
321
246
-
Glu
CTC
[ENA]
¢þ
>WENV183510923
OMHT01001850
[OMHT] human oral metagenome; human oral
330
405
+
Arg
GCG
[ENA]
¢þ
>WENV183510966
OMHT01007303
[OMHT] human oral metagenome; human oral
332
259
-
Gln
CTG
[ENA]
¢þ
>WENV183510910
OMHT01000649
[OMHT] human oral metagenome; human oral
338
264
-
Ile2
CAT
[ENA]
¢þ
>WENV183510934
OMHT01003457
[OMHT] human oral metagenome; human oral
350
422
+
Arg
CCT
[ENA]
¢þ
>WENV183510944
OMHT01004713
[OMHT] human oral metagenome; human oral
355
428
+
Lys
TTT
[ENA]
¢þ
>WENV183510973
OMHT01007650
[OMHT] human oral metagenome; human oral
368
282
-
Leu
CAA
[ENA]
¢þ
>WENV183510958
OMHT01005377
[OMHT] human oral metagenome; human oral
372
295
-
Ala
GGC
[ENA]
¢þ
>WENV183510905
OMHT01000304
[OMHT] human oral metagenome; human oral
385
311
-
Arg
CCT
[ENA]
¢þ
>WENV183510941
OMHT01004210
[OMHT] human oral metagenome; human oral
387
461
+
Glu
TTC
[ENA]
¢þ
>WENV183510942
OMHT01004607
[OMHT] human oral metagenome; human oral
387
462
+
Arg
CCG
[ENA]
¢þ
>WENV183510928
OMHT01001959
[OMHT] human oral metagenome; human oral
390
465
+
Thr
GGT
[ENA]
¢þ
>WENV183510953
OMHT01005190
[OMHT] human oral metagenome; human oral
397
323
-
Glu
TTC
[ENA]
¢þ
>WENV183510972
OMHT01007553
[OMHT] human oral metagenome; human oral
399
474
+
Lys
TTT
[ENA]
¢þ
>WENV183510959
OMHT01005722
[OMHT] human oral metagenome; human oral
401
326
-
Lys
TTT
[ENA]
¢þ
>WENV183510938
OMHT01003811
[OMHT] human oral metagenome; human oral
401
327
-
Ala
TGC
[ENA]
¢þ
>WENV183510914
OMHT01000715
[OMHT] human oral metagenome; human oral
401
476
+
Met
CAT
[ENA]
¢þ
>WENV183510946
OMHT01004903
[OMHT] human oral metagenome; human oral
402
329
-
Glu
CTC
[ENA]
¢þ
>WENV183510980
OMHT01008828
[OMHT] human oral metagenome; human oral
404
476
+
Thr
CGT
[ENA]
¢þ
>WENV183510976
OMHT01007786
[OMHT] human oral metagenome; human oral
410
484
+
Val
GAC
[ENA]
¢þ
>WENV183510964
OMHT01006704
[OMHT] human oral metagenome; human oral
418
493
+
Ala
CGC
[ENA]
¢þ
>WENV183510962
OMHT01006077
[OMHT] human oral metagenome; human oral
444
515
+
Gln
CTG
[ENA]
¢þ
>WENV183510924
OMHT01001850
[OMHT] human oral metagenome; human oral
445
531
+
Ser
CGA
[ENA]
¢þ
>WENV183510968
OMHT01007308
[OMHT] human oral metagenome; human oral
464
539
+
Asn
GTT
[ENA]
¢þ
>WENV183510940
OMHT01004168
[OMHT] human oral metagenome; human oral
473
401
-
Gln
TTG
[ENA]
¢þ
>WENV183510949
OMHT01005034
[OMHT] human oral metagenome; human oral
478
407
-
Cys
GCA
[ENA]
¢þ
>WENV183510952
OMHT01005190
[OMHT] human oral metagenome; human oral
480
405
-
Lys
CTT
[ENA]
¢þ
>WENV183510899
OMHT01000184
[OMHT] human oral metagenome; human oral
504
431
-
Gly
CCC
[ENA]
¢þ
>WENV183510929
OMHT01001959
[OMHT] human oral metagenome; human oral
504
578
+
Met
CAT
[ENA]
¢þ
>WENV183510937
OMHT01003811
[OMHT] human oral metagenome; human oral
506
431
-
Ile
GAT
[ENA]
¢þ
>WENV183510945
OMHT01004903
[OMHT] human oral metagenome; human oral
547
475
-
Gln
CTG
[ENA]
¢þ
>WENV183510911
OMHT01000681
[OMHT] human oral metagenome; human oral
547
621
+
Ile
GAT
[ENA]
¢þ
>WENV183510950
OMHT01005058
[OMHT] human oral metagenome; human oral
549
475
-
Ile2
CAT
[ENA]
¢þ
>WENV183510902
OMHT01000201
[OMHT] human oral metagenome; human oral
549
476
-
Trp
CCA
[ENA]
¢þ
>WENV183510951
OMHT01005190
[OMHT] human oral metagenome; human oral
565
490
-
Gly
TCC
[ENA]
¢þ
>WENV183510893
OMHT01000049
[OMHT] human oral metagenome; human oral
569
496
-
Phe
GAA
[ENA]
¢þ
>WENV183510932
OMHT01003306
[OMHT] human oral metagenome; human oral
617
699
+
Leu
TAG
[ENA]
¢þ
>WENV183510912
OMHT01000681
[OMHT] human oral metagenome; human oral
622
696
+
Ala
TGC
[ENA]
¢þ
>WENV183510925
OMHT01001850
[OMHT] human oral metagenome; human oral
623
711
+
Ser
GGA
[ENA]
¢þ
>WENV183510930
OMHT01002149
[OMHT] human oral metagenome; human oral
641
569
-
Thr
GGT
[ENA]
¢þ
>WENV183510926
OMHT01001934
[OMHT] human oral metagenome; human oral
674
760
+
Ser
TGA
[ENA]
¢þ
>WENV183510920
OMHT01001710
[OMHT] human oral metagenome; human oral
757
831
+
Thr
CGT
[ENA]
¢þ
>WENV183510917
OMHT01001127
[OMHT] human oral metagenome; human oral
825
752
-
Ala
TGC
[ENA]
¢þ
>WENV183510919
OMHT01001493
[OMHT] human oral metagenome; human oral
875
950
+
Lys
TTT
[ENA]
¢þ
>WENV183510918
OMHT01001368
[OMHT] human oral metagenome; human oral
983
899
-
Leu
GAG
[ENA]
¢þ
>WENV183510888
OMHT01000025
[OMHT] human oral metagenome; human oral
1166
1079
-
Ser
GCT
[ENA]
¢þ
>WENV183510895
OMHT01000110
[OMHT] human oral metagenome; human oral
1560
1487
-
Thr
CGT
[ENA]
¢þ
>WENV183510908
OMHT01000379
[OMHT] human oral metagenome; human oral
1756
1832
+
Arg
TCT
[ENA]
¢þ
>WENV183510901
OMHT01000201
[OMHT] human oral metagenome; human oral
1946
1874
-
Thr
GGT
[ENA]
¢þ
>WENV183510906
OMHT01000330
[OMHT] human oral metagenome; human oral
2021
1948
-
Pro
CGG
[ENA]
¢þ
>WENV183510900
OMHT01000201
[OMHT] human oral metagenome; human oral
2061
1977
-
Tyr
GTA
[ENA]
¢þ
>WENV183510897
OMHT01000118
[OMHT] human oral metagenome; human oral
2308
2392
+
Leu
CAA
[ENA]
¢þ
>WENV183510904
OMHT01000219
[OMHT] human oral metagenome; human oral
2696
2623
-
Lys
CTT
[ENA]
¢þ
>WENV183510903
OMHT01000213
[OMHT] human oral metagenome; human oral
3241
3166
-
Arg
TCT
[ENA]
¢þ
>WENV183510898
OMHT01000165
[OMHT] human oral metagenome; human oral
3681
3610
-
Gln
CTG
[ENA]
¢þ
>WENV183510894
OMHT01000077
[OMHT] human oral metagenome; human oral
3938
4013
+
Pro
GGG
[ENA]
¢þ
>WENV183510896
OMHT01000114
[OMHT] human oral metagenome; human oral
3980
3905
-
Pro
TGG
[ENA]
¢þ
>WENV183510886
OMHT01000014
[OMHT] human oral metagenome; human oral
6714
6788
+
His
GTG
[ENA]
¢þ
>WENV183510892
OMHT01000043
[OMHT] human oral metagenome; human oral
7268
7184
-
Leu
GAG
[ENA]
¢þ
>WENV183510891
OMHT01000043
[OMHT] human oral metagenome; human oral
7385
7301
-
Leu
CAG
[ENA]
¢þ
>WENV183510890
OMHT01000043
[OMHT] human oral metagenome; human oral
7548
7473
-
Gly
GCC
[ENA]
¢þ
>WENV183510885
OMHT01000008
[OMHT] human oral metagenome; human oral
8149
8075
-
Asn
GTT
[ENA]
¢þ
>WENV183510884
OMHT01000008
[OMHT] human oral metagenome; human oral
8245
8171
-
Asn
GTT
[ENA]
¢þ
>WENV183510889
OMHT01000029
[OMHT] human oral metagenome; human oral
9600
9688
+
Ser
GGA
[ENA]
¢þ
>WENV183510887
OMHT01000016
[OMHT] human oral metagenome; human oral
10038
10110
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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