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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OOAP] human gut metagenome; human gut
HIT:
33 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183544854
OOAP01000029
[OOAP] human gut metagenome; human gut
119
46
-
Lys
TTT
[ENA]
¢þ
>WENV183544878
OOAP01002214
[OOAP] human gut metagenome; human gut
130
56
-
His
GTG
[ENA]
¢þ
>WENV183544875
OOAP01001769
[OOAP] human gut metagenome; human gut
146
71
-
Pro
GGG
[ENA]
¢þ
>WENV183544880
OOAP01002918
[OOAP] human gut metagenome; human gut
148
74
-
Thr
TGT
[ENA]
¢þ
>WENV183544877
OOAP01001989
[OOAP] human gut metagenome; human gut
173
99
-
Asp
GTC
[ENA]
¢þ
>WENV183544883
OOAP01004234
[OOAP] human gut metagenome; human gut
204
291
+
Ser
GCT
[ENA]
¢þ
>WENV183544863
OOAP01000459
[OOAP] human gut metagenome; human gut
216
290
+
Ile
GAT
[ENA]
¢þ
>WENV183544859
OOAP01000371
[OOAP] human gut metagenome; human gut
230
156
-
Ala
GGC
[ENA]
¢þ
>WENV183544864
OOAP01000459
[OOAP] human gut metagenome; human gut
304
379
+
Ala
TGC
[ENA]
¢þ
>WENV183544865
OOAP01000547
[OOAP] human gut metagenome; human gut
349
261
-
Ser
GGA
[ENA]
¢þ
>WENV183544885
OOAP01005663
[OOAP] human gut metagenome; human gut
451
524
+
Gly
CCC
[ENA]
¢þ
>WENV183544884
OOAP01005432
[OOAP] human gut metagenome; human gut
498
414
-
Leu
CAA
[ENA]
¢þ
>WENV183544872
OOAP01001246
[OOAP] human gut metagenome; human gut
502
428
-
Sup
CTA
[ENA]
¢þ
>WENV183544882
OOAP01003458
[OOAP] human gut metagenome; human gut
554
470
-
Tyr
GTA
[ENA]
¢þ
>WENV183544857
OOAP01000166
[OOAP] human gut metagenome; human gut
578
652
+
Ile2
CAT
[ENA]
¢þ
>WENV183544874
OOAP01001767
[OOAP] human gut metagenome; human gut
600
682
+
Leu
TAG
[ENA]
¢þ
>WENV183544881
OOAP01003314
[OOAP] human gut metagenome; human gut
750
677
-
Thr
CGT
[ENA]
¢þ
>WENV183544879
OOAP01002276
[OOAP] human gut metagenome; human gut
802
877
+
Pro
TGG
[ENA]
¢þ
>WENV183544871
OOAP01001171
[OOAP] human gut metagenome; human gut
924
999
+
fMet
CAT
[ENA]
¢þ
>WENV183544876
OOAP01001908
[OOAP] human gut metagenome; human gut
1036
951
-
Ser
TGA
[ENA]
¢þ
>WENV183544873
OOAP01001503
[OOAP] human gut metagenome; human gut
1078
1004
-
Ala
TGC
[ENA]
¢þ
>WENV183544866
OOAP01000649
[OOAP] human gut metagenome; human gut
1097
1170
+
Gly
CCC
[ENA]
¢þ
>WENV183544861
OOAP01000416
[OOAP] human gut metagenome; human gut
1218
1290
+
Arg
CCG
[ENA]
¢þ
>WENV183544869
OOAP01000769
[OOAP] human gut metagenome; human gut
1480
1407
-
Gly
GCC
[ENA]
¢þ
>WENV183544868
OOAP01000769
[OOAP] human gut metagenome; human gut
1580
1496
-
Leu
GAG
[ENA]
¢þ
>WENV183544870
OOAP01000793
[OOAP] human gut metagenome; human gut
1660
1734
+
Ile
GAT
[ENA]
¢þ
>WENV183544867
OOAP01000769
[OOAP] human gut metagenome; human gut
1678
1595
-
Leu
CAG
[ENA]
¢þ
>WENV183544860
OOAP01000397
[OOAP] human gut metagenome; human gut
2198
2280
+
Leu
TAG
[ENA]
¢þ
>WENV183544862
OOAP01000433
[OOAP] human gut metagenome; human gut
2340
2266
-
Asn
GTT
[ENA]
¢þ
>WENV183544856
OOAP01000138
[OOAP] human gut metagenome; human gut
2349
2277
-
Glu
TTC
[ENA]
¢þ
>WENV183544855
OOAP01000122
[OOAP] human gut metagenome; human gut
2491
2416
-
Phe
GAA
[ENA]
¢þ
>WENV183544858
OOAP01000253
[OOAP] human gut metagenome; human gut
3119
3045
-
Thr
TGT
[ENA]
¢þ
>WENV183544853
OOAP01000018
[OOAP] human gut metagenome; human gut
7958
7885
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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