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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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|
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HOW TO USE
tRNA gene List
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
HIT:
96 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183636078
OOJJ01060808
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
3
76
+
Gly
TCC
[ENA]
¢þ
>WENV183636065
OOJJ01041431
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
25
98
+
Cys
GCA
[ENA]
¢þ
>WENV183636080
OOJJ01062008
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
49
121
+
Met
CAT
[ENA]
¢þ
>WENV183636077
OOJJ01060139
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
58
130
+
Arg
CCT
[ENA]
¢þ
>WENV183636071
OOJJ01049801
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
61
146
+
Leu
CAA
[ENA]
¢þ
>WENV183636067
OOJJ01042195
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
67
140
+
Ile
GAT
[ENA]
¢þ
>WENV183635991
OOJJ01000002
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
73
146
+
Arg
CCG
[ENA]
¢þ
>WENV183636014
OOJJ01000395
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
83
158
+
Trp
CCA
[ENA]
¢þ
>WENV183636050
OOJJ01013104
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
124
49
-
Met
CAT
[ENA]
¢þ
>WENV183636056
OOJJ01023708
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
127
201
+
His
GTG
[ENA]
¢þ
>WENV183636073
OOJJ01054535
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
129
45
-
Leu
CAG
[ENA]
¢þ
>WENV183636057
OOJJ01025671
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
133
61
-
Cys
GCA
[ENA]
¢þ
>WENV183636030
OOJJ01003760
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
146
58
-
Pro
TGG
[ENA]
¢þ
>WENV183636053
OOJJ01019177
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
148
221
+
Arg
ACG
[ENA]
¢þ
>WENV183636032
OOJJ01003866
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
150
75
-
Glu
CTC
[ENA]
¢þ
>WENV183636049
OOJJ01012840
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
155
82
-
Met
CAT
[ENA]
¢þ
>WENV183636082
OOJJ01063851
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
166
90
-
His
GTG
[ENA]
¢þ
>WENV183636009
OOJJ01000035
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
191
262
+
Arg
TCT
[ENA]
¢þ
>WENV183636028
OOJJ01002876
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
193
122
-
Gln
TTG
[ENA]
¢þ
>WENV183636047
OOJJ01012122
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
201
129
-
Phe
GAA
[ENA]
¢þ
>WENV183636066
OOJJ01041679
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
202
278
+
Leu
CAA
[ENA]
¢þ
>WENV183636081
OOJJ01063371
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
204
125
-
Gln
TTG
[ENA]
¢þ
>WENV183636086
OOJJ01067124
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
204
128
-
fMet
CAT
[ENA]
¢þ
>WENV183636061
OOJJ01036778
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
208
282
+
Thr
TGT
[ENA]
¢þ
>WENV183636055
OOJJ01022790
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
214
287
+
Asn
GTT
[ENA]
¢þ
>WENV183636075
OOJJ01057266
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
223
311
+
Ser
GCT
[ENA]
¢þ
>WENV183636048
OOJJ01012805
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
234
322
+
Arg
TCT
[ENA]
¢þ
>WENV183636072
OOJJ01051942
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
248
176
-
Arg
CCT
[ENA]
¢þ
>WENV183636062
OOJJ01037526
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
249
175
-
Arg
CCG
[ENA]
¢þ
>WENV183636052
OOJJ01015990
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
258
176
-
Tyr
GTA
[ENA]
¢þ
>WENV183636083
OOJJ01064442
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
260
343
+
Tyr
GTA
[ENA]
¢þ
>WENV183636079
OOJJ01060808
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
264
342
+
Asn
GTT
[ENA]
¢þ
>WENV183636043
OOJJ01011651
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
269
341
+
Ala
CGC
[ENA]
¢þ
>WENV183636059
OOJJ01034895
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
270
343
+
Glu
CTC
[ENA]
¢þ
>WENV183636038
OOJJ01007556
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
278
203
-
Ala
TGC
[ENA]
¢þ
>WENV183636018
OOJJ01001446
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
290
362
+
Arg
CCG
[ENA]
¢þ
>WENV183636063
OOJJ01038095
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
303
376
+
Asn
GTT
[ENA]
¢þ
>WENV183636035
OOJJ01005377
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
304
233
-
Gln
TTG
[ENA]
¢þ
>WENV183636084
OOJJ01065483
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
322
248
-
Arg
TCT
[ENA]
¢þ
>WENV183636027
OOJJ01002850
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
326
252
-
Glu
TTC
[ENA]
¢þ
>WENV183636076
OOJJ01059739
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
335
406
+
Gln
CTG
[ENA]
¢þ
>WENV183636069
OOJJ01044239
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
344
270
-
Arg
TCT
[ENA]
¢þ
>WENV183636023
OOJJ01001665
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
346
273
-
Val
CAC
[ENA]
¢þ
>WENV183636054
OOJJ01019861
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
353
279
-
Ile
GAT
[ENA]
¢þ
>WENV183636070
OOJJ01045312
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
353
427
+
Pro
GGG
[ENA]
¢þ
>WENV183636031
OOJJ01003866
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
358
286
-
Gln
CTG
[ENA]
¢þ
>WENV183636085
OOJJ01065638
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
361
290
-
Trp
CCA
[ENA]
¢þ
>WENV183636074
OOJJ01055131
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
363
439
+
Pro
CGG
[ENA]
¢þ
>WENV183636042
OOJJ01011084
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
389
305
-
Leu
CAG
[ENA]
¢þ
>WENV183636040
OOJJ01010964
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
396
471
+
fMet
CAT
[ENA]
¢þ
>WENV183636037
OOJJ01007556
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
409
333
-
Ile
GAT
[ENA]
¢þ
>WENV183636058
OOJJ01033322
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
446
372
-
Asp
GTC
[ENA]
¢þ
>WENV183636007
OOJJ01000020
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
449
521
+
Phe
GAA
[ENA]
¢þ
>WENV183636045
OOJJ01012060
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
469
542
+
Gly
GCC
[ENA]
¢þ
>WENV183636024
OOJJ01002000
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
493
420
-
Trp
CCA
[ENA]
¢þ
>WENV183636068
OOJJ01044239
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
496
421
-
Pro
TGG
[ENA]
¢þ
>WENV183636015
OOJJ01000466
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
497
424
-
Thr
TGT
[ENA]
¢þ
>WENV183636036
OOJJ01006611
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
498
583
+
Ser
TGA
[ENA]
¢þ
>WENV183636025
OOJJ01002054
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
509
437
-
Trp
CCA
[ENA]
¢þ
>WENV183636039
OOJJ01009209
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
511
436
-
Gly
GCC
[ENA]
¢þ
>WENV183636064
OOJJ01040748
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
515
440
-
Pro
CGG
[ENA]
¢þ
>WENV183636019
OOJJ01001534
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
536
619
+
Tyr
GTA
[ENA]
¢þ
>WENV183636033
OOJJ01003949
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
559
485
-
Val
TAC
[ENA]
¢þ
>WENV183636029
OOJJ01003365
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
560
635
+
Ile
AAT
[ENA]
¢þ
>WENV183636060
OOJJ01036684
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
561
486
-
Thr
AGT
[ENA]
¢þ
>WENV183636046
OOJJ01012122
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
609
538
-
Glu
TTC
[ENA]
¢þ
>WENV183636051
OOJJ01015785
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
611
535
-
Pro
CGG
[ENA]
¢þ
>WENV183636041
OOJJ01010964
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
619
693
+
Thr
TGT
[ENA]
¢þ
>WENV183636044
OOJJ01012052
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
677
598
-
Leu
TAG
[ENA]
¢þ
>WENV183636034
OOJJ01005078
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
680
605
-
Pro
TGG
[ENA]
¢þ
>WENV183636020
OOJJ01001665
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
725
798
+
Gly
GCC
[ENA]
¢þ
>WENV183636026
OOJJ01002850
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
799
727
-
Met
CAT
[ENA]
¢þ
>WENV183636021
OOJJ01001665
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
826
897
+
Cys
GCA
[ENA]
¢þ
>WENV183636022
OOJJ01001665
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
898
970
+
Val
GAC
[ENA]
¢þ
>WENV183636017
OOJJ01000924
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
906
832
-
Ile2
CAT
[ENA]
¢þ
>WENV183636016
OOJJ01000652
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
1020
934
-
Ser
GGA
[ENA]
¢þ
>WENV183636012
OOJJ01000079
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
1262
1173
-
Ser
GCT
[ENA]
¢þ
>WENV183636011
OOJJ01000037
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
1587
1514
-
Pro
GGG
[ENA]
¢þ
>WENV183636010
OOJJ01000037
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
1744
1823
+
Leu
TAG
[ENA]
¢þ
>WENV183636013
OOJJ01000164
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
1979
1905
-
His
GTG
[ENA]
¢þ
>WENV183636000
OOJJ01000007
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
2205
2116
-
Ser
TGA
[ENA]
¢þ
>WENV183636008
OOJJ01000020
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
2237
2310
+
Ile2
CAT
[ENA]
¢þ
>WENV183635998
OOJJ01000007
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
2911
2982
+
Gly
GCC
[ENA]
¢þ
>WENV183635999
OOJJ01000007
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
3185
3112
-
fMet
CAT
[ENA]
¢þ
>WENV183636006
OOJJ01000016
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
3316
3398
+
Leu
CAA
[ENA]
¢þ
>WENV183636003
OOJJ01000010
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
3681
3756
+
Arg
ACG
[ENA]
¢þ
>WENV183636005
OOJJ01000015
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
4173
4102
-
Gln
TTG
[ENA]
¢þ
>WENV183636001
OOJJ01000008
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
4334
4406
+
Thr
GGT
[ENA]
¢þ
>WENV183636004
OOJJ01000010
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
4403
4330
-
Asn
GTT
[ENA]
¢þ
>WENV183636002
OOJJ01000008
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
4607
4533
-
His
GTG
[ENA]
¢þ
>WENV183635997
OOJJ01000003
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
8694
8771
+
Leu
TAA
[ENA]
¢þ
>WENV183635996
OOJJ01000002
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
9345
9272
-
Trp
CCA
[ENA]
¢þ
>WENV183635995
OOJJ01000002
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
9577
9502
-
Pro
TGG
[ENA]
¢þ
>WENV183635992
OOJJ01000002
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
13986
14074
+
Tyr
GTA
[ENA]
¢þ
>WENV183635993
OOJJ01000002
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
14328
14403
+
Asp
GTC
[ENA]
¢þ
>WENV183635994
OOJJ01000002
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
16418
16348
-
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK