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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OULP] metagenome; soil
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183696677
OULP01000014
[OULP] metagenome; soil
14
87
+
Gln
CTG
[ENA]
¢þ
>WENV183696680
OULP01000024
[OULP] metagenome; soil
26
100
+
Gly
GCC
[ENA]
¢þ
>WENV183696681
OULP01000032
[OULP] metagenome; soil
63
134
+
Val
TAC
[ENA]
¢þ
>WENV183696678
OULP01000017
[OULP] metagenome; soil
3646
3728
+
Leu
TAG
[ENA]
¢þ
>WENV183696679
OULP01000017
[OULP] metagenome; soil
5676
5759
+
Leu
TAA
[ENA]
¢þ
>WENV183696683
OULP01000034
[OULP] metagenome; soil
7616
7687
+
Val
TAC
[ENA]
¢þ
>WENV183696682
OULP01000033
[OULP] metagenome; soil
7929
7858
-
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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