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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OULQ] metagenome; soil
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183696684
OULQ01000027
[OULQ] metagenome; soil
1672
1747
+
Trp
CCA
[ENA]
¢þ
>WENV183696685
OULQ01000027
[OULQ] metagenome; soil
1902
1983
+
Tyr
GTA
[ENA]
¢þ
>WENV183696686
OULQ01000027
[OULQ] metagenome; soil
2745
2831
+
Leu
TAG
[ENA]
¢þ
>WENV183696687
OULQ01000027
[OULQ] metagenome; soil
3263
3339
+
Ile
GAT
[ENA]
¢þ
>WENV183696688
OULQ01000027
[OULQ] metagenome; soil
3439
3512
+
Asn
GTT
[ENA]
¢þ
>WENV183696689
OULQ01000027
[OULQ] metagenome; soil
3757
3832
+
Thr
CGT
[ENA]
¢þ
>WENV183696690
OULQ01000027
[OULQ] metagenome; soil
3856
3926
+
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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