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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OULZ] metagenome; soil
HIT:
71 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183696713
OULZ01000002
[OULZ] metagenome; soil
40578
40660
+
Tyr
GTA
[ENA]
¢þ
>WENV183696714
OULZ01000002
[OULZ] metagenome; soil
40716
40809
+
Asn
GTT
[ENA]
¢þ
>WENV183696715
OULZ01000002
[OULZ] metagenome; soil
40983
41058
+
Met
CAT
[ENA]
¢þ
>WENV183696716
OULZ01000002
[OULZ] metagenome; soil
41162
41238
+
Pro
CGG
[ENA]
¢þ
>WENV183696717
OULZ01000002
[OULZ] metagenome; soil
41251
41327
+
Pro
CGG
[ENA]
¢þ
>WENV183696718
OULZ01000002
[OULZ] metagenome; soil
41631
41705
+
Pro
TGG
[ENA]
¢þ
>WENV183696719
OULZ01000002
[OULZ] metagenome; soil
41720
41794
+
Ile
GAT
[ENA]
¢þ
>WENV183696720
OULZ01000002
[OULZ] metagenome; soil
41853
41928
+
Lys
TTT
[ENA]
¢þ
>WENV183696721
OULZ01000002
[OULZ] metagenome; soil
42996
43087
+
Ser
GCT
[ENA]
¢þ
>WENV183696722
OULZ01000002
[OULZ] metagenome; soil
43095
43170
+
Thr
GGT
[ENA]
¢þ
>WENV183696723
OULZ01000002
[OULZ] metagenome; soil
43185
43260
+
Ala
GGC
[ENA]
¢þ
>WENV183696724
OULZ01000002
[OULZ] metagenome; soil
43339
43414
+
Ala
CGC
[ENA]
¢þ
>WENV183696725
OULZ01000002
[OULZ] metagenome; soil
43437
43512
+
Ala
TGC
[ENA]
¢þ
>WENV183696726
OULZ01000002
[OULZ] metagenome; soil
43543
43620
+
Pro
GGG
[ENA]
¢þ
>WENV183696727
OULZ01000002
[OULZ] metagenome; soil
43641
43726
+
Tyr
GTA
[ENA]
¢þ
>WENV183696728
OULZ01000002
[OULZ] metagenome; soil
43733
43807
+
Ile
GAT
[ENA]
¢þ
>WENV183696729
OULZ01000002
[OULZ] metagenome; soil
43883
43957
+
Val
TAC
[ENA]
¢þ
>WENV183696730
OULZ01000002
[OULZ] metagenome; soil
44038
44122
+
Leu
GAG
[ENA]
¢þ
>WENV183696731
OULZ01000002
[OULZ] metagenome; soil
44147
44234
+
His
GTG
[ENA]
¢þ
>WENV183696732
OULZ01000002
[OULZ] metagenome; soil
44257
44348
+
Ser
GCT
[ENA]
¢þ
>WENV183696733
OULZ01000002
[OULZ] metagenome; soil
44405
44479
+
His
GTG
[ENA]
¢þ
>WENV183696734
OULZ01000002
[OULZ] metagenome; soil
44502
44577
+
Thr
CGT
[ENA]
¢þ
>WENV183696735
OULZ01000002
[OULZ] metagenome; soil
44589
44674
+
Trp
CCA
[ENA]
¢þ
>WENV183696736
OULZ01000002
[OULZ] metagenome; soil
44684
44760
+
Met
CAT
[ENA]
¢þ
>WENV183696737
OULZ01000002
[OULZ] metagenome; soil
44769
44846
+
Lys
TTT
[ENA]
¢þ
>WENV183696738
OULZ01000002
[OULZ] metagenome; soil
44856
44931
+
Lys
CTT
[ENA]
¢þ
>WENV183696739
OULZ01000002
[OULZ] metagenome; soil
44973
45057
+
Lys
CTT
[ENA]
¢þ
>WENV183696783
OULZ01000012
[OULZ] metagenome; soil
46165
46090
-
Thr
TGT
[ENA]
¢þ
>WENV183696782
OULZ01000012
[OULZ] metagenome; soil
46260
46176
-
Leu
CAA
[ENA]
¢þ
>WENV183696754
OULZ01000007
[OULZ] metagenome; soil
81019
81094
+
Gly
GCC
[ENA]
¢þ
>WENV183696755
OULZ01000007
[OULZ] metagenome; soil
81410
81496
+
Ser
GGA
[ENA]
¢þ
>WENV183696756
OULZ01000007
[OULZ] metagenome; soil
81629
81709
+
Gln
TTG
[ENA]
¢þ
>WENV183696757
OULZ01000007
[OULZ] metagenome; soil
81733
81819
+
Leu
GAG
[ENA]
¢þ
>WENV183696758
OULZ01000007
[OULZ] metagenome; soil
81843
81918
+
Phe
GAA
[ENA]
¢þ
>WENV183696759
OULZ01000007
[OULZ] metagenome; soil
82015
82100
+
Cys
GCA
[ENA]
¢þ
>WENV183696760
OULZ01000007
[OULZ] metagenome; soil
82233
82307
+
Val
GAC
[ENA]
¢þ
>WENV183696761
OULZ01000007
[OULZ] metagenome; soil
82317
82392
+
Trp
CCA
[ENA]
¢þ
>WENV183696762
OULZ01000007
[OULZ] metagenome; soil
82896
82970
+
Cys
GCA
[ENA]
¢þ
>WENV183696763
OULZ01000007
[OULZ] metagenome; soil
83022
83096
+
Thr
GGT
[ENA]
¢þ
>WENV183696764
OULZ01000007
[OULZ] metagenome; soil
83947
84022
+
Asn
GTT
[ENA]
¢þ
>WENV183696765
OULZ01000007
[OULZ] metagenome; soil
84058
84134
+
fMet
CAT
[ENA]
¢þ
>WENV183696766
OULZ01000007
[OULZ] metagenome; soil
84231
84306
+
Gly
TCC
[ENA]
¢þ
>WENV183696767
OULZ01000007
[OULZ] metagenome; soil
84575
84650
+
Thr
TGT
[ENA]
¢þ
>WENV183696768
OULZ01000007
[OULZ] metagenome; soil
84661
84747
+
Gln
CTG
[ENA]
¢þ
>WENV183696769
OULZ01000007
[OULZ] metagenome; soil
85275
85354
+
Gln
CTG
[ENA]
¢þ
>WENV183696770
OULZ01000007
[OULZ] metagenome; soil
85573
85659
+
Leu
CAG
[ENA]
¢þ
>WENV183696771
OULZ01000007
[OULZ] metagenome; soil
85669
85758
+
Ser
CGA
[ENA]
¢þ
>WENV183696772
OULZ01000007
[OULZ] metagenome; soil
85847
85934
+
Ser
CGA
[ENA]
¢þ
>WENV183696773
OULZ01000007
[OULZ] metagenome; soil
85989
86080
+
Ser
TGA
[ENA]
¢þ
>WENV183696774
OULZ01000007
[OULZ] metagenome; soil
86093
86185
+
Leu
CAA
[ENA]
¢þ
>WENV183696775
OULZ01000007
[OULZ] metagenome; soil
86197
86291
+
Leu
TAA
[ENA]
¢þ
>WENV183696776
OULZ01000007
[OULZ] metagenome; soil
86310
86384
+
Val
GAC
[ENA]
¢þ
>WENV183696777
OULZ01000007
[OULZ] metagenome; soil
86391
86466
+
Val
CAC
[ENA]
¢þ
>WENV183696778
OULZ01000007
[OULZ] metagenome; soil
88282
88359
+
Leu
TAG
[ENA]
¢þ
>WENV183696779
OULZ01000007
[OULZ] metagenome; soil
88665
88739
+
Arg
CCT
[ENA]
¢þ
>WENV183696781
OULZ01000009
[OULZ] metagenome; soil
92377
92452
+
Thr
TGT
[ENA]
¢þ
>WENV183696780
OULZ01000007
[OULZ] metagenome; soil
99626
99704
+
fMet
CAT
[ENA]
¢þ
>WENV183696753
OULZ01000002
[OULZ] metagenome; soil
107489
107416
-
Gly
TCC
[ENA]
¢þ
>WENV183696752
OULZ01000002
[OULZ] metagenome; soil
107589
107505
-
Leu
TAG
[ENA]
¢þ
>WENV183696751
OULZ01000002
[OULZ] metagenome; soil
107707
107632
-
Val
TAC
[ENA]
¢þ
>WENV183696750
OULZ01000002
[OULZ] metagenome; soil
107844
107768
-
Pro
TGG
[ENA]
¢þ
>WENV183696749
OULZ01000002
[OULZ] metagenome; soil
108358
108283
-
Ala
TGC
[ENA]
¢þ
>WENV183696748
OULZ01000002
[OULZ] metagenome; soil
108695
108611
-
Leu
CAA
[ENA]
¢þ
>WENV183696740
OULZ01000002
[OULZ] metagenome; soil
139058
139132
+
Glu
TTC
[ENA]
¢þ
>WENV183696741
OULZ01000002
[OULZ] metagenome; soil
139140
139214
+
Asp
GTC
[ENA]
¢þ
>WENV183696742
OULZ01000002
[OULZ] metagenome; soil
139310
139389
+
Arg
ACG
[ENA]
¢þ
>WENV183696743
OULZ01000002
[OULZ] metagenome; soil
139397
139473
+
Glu
CTC
[ENA]
¢þ
>WENV183696744
OULZ01000002
[OULZ] metagenome; soil
139478
139553
+
Glu
TTC
[ENA]
¢þ
>WENV183696745
OULZ01000002
[OULZ] metagenome; soil
140397
140474
+
Arg
CCG
[ENA]
¢þ
>WENV183696746
OULZ01000002
[OULZ] metagenome; soil
140482
140558
+
Asp
GTC
[ENA]
¢þ
>WENV183696747
OULZ01000002
[OULZ] metagenome; soil
141483
141559
+
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK