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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OUMM] metagenome; soil
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183696870
OUMM01000018
[OUMM] metagenome; soil
429
355
-
Asn
GTT
[ENA]
¢þ
>WENV183696876
OUMM01000033
[OUMM] metagenome; soil
1114
1189
+
Trp
CCA
[ENA]
¢þ
>WENV183696867
OUMM01000012
[OUMM] metagenome; soil
1897
1820
-
His
GTG
[ENA]
¢þ
>WENV183696863
OUMM01000010
[OUMM] metagenome; soil
1938
2014
+
Pro
TGG
[ENA]
¢þ
>WENV183696880
OUMM01000034
[OUMM] metagenome; soil
2044
2120
+
Lys
CTT
[ENA]
¢þ
>WENV183696865
OUMM01000012
[OUMM] metagenome; soil
2549
2623
+
Gly
TCC
[ENA]
¢þ
>WENV183696866
OUMM01000012
[OUMM] metagenome; soil
2712
2788
+
Arg
TCT
[ENA]
¢þ
>WENV183696864
OUMM01000010
[OUMM] metagenome; soil
2729
2804
+
Pro
CGG
[ENA]
¢þ
>WENV183696883
OUMM01000035
[OUMM] metagenome; soil
3508
3422
-
Leu
CAG
[ENA]
¢þ
>WENV183696859
OUMM01000006
[OUMM] metagenome; soil
4123
4047
-
Arg
CCG
[ENA]
¢þ
>WENV183696862
OUMM01000008
[OUMM] metagenome; soil
5204
5117
-
Leu
TAA
[ENA]
¢þ
>WENV183696882
OUMM01000035
[OUMM] metagenome; soil
5424
5348
-
Val
TAC
[ENA]
¢þ
>WENV183696881
OUMM01000035
[OUMM] metagenome; soil
5546
5460
-
Leu
GAG
[ENA]
¢þ
>WENV183696861
OUMM01000008
[OUMM] metagenome; soil
5788
5715
-
Cys
GCA
[ENA]
¢þ
>WENV183696869
OUMM01000013
[OUMM] metagenome; soil
5908
5833
-
Ile2
CAT
[ENA]
¢þ
>WENV183696868
OUMM01000013
[OUMM] metagenome; soil
6471
6545
+
fMet
CAT
[ENA]
¢þ
>WENV183696879
OUMM01000033
[OUMM] metagenome; soil
6998
6924
-
Thr
GGT
[ENA]
¢þ
>WENV183696878
OUMM01000033
[OUMM] metagenome; soil
7088
7004
-
Tyr
GTA
[ENA]
¢þ
>WENV183696877
OUMM01000033
[OUMM] metagenome; soil
7183
7107
-
Thr
TGT
[ENA]
¢þ
>WENV183696858
OUMM01000005
[OUMM] metagenome; soil
7370
7445
+
Phe
GAA
[ENA]
¢þ
>WENV183696857
OUMM01000002
[OUMM] metagenome; soil
8602
8527
-
Pro
GGG
[ENA]
¢þ
>WENV183696875
OUMM01000029
[OUMM] metagenome; soil
9131
9207
+
Met
CAT
[ENA]
¢þ
>WENV183696871
OUMM01000019
[OUMM] metagenome; soil
9900
9976
+
Glu
CTC
[ENA]
¢þ
>WENV183696874
OUMM01000022
[OUMM] metagenome; soil
12731
12805
+
Glu
TTC
[ENA]
¢þ
>WENV183696848
OUMM01000002
[OUMM] metagenome; soil
15938
16014
+
Val
GAC
[ENA]
¢þ
>WENV183696849
OUMM01000002
[OUMM] metagenome; soil
21445
21520
+
Thr
CGT
[ENA]
¢þ
>WENV183696850
OUMM01000002
[OUMM] metagenome; soil
21531
21605
+
Gly
CCC
[ENA]
¢þ
>WENV183696851
OUMM01000002
[OUMM] metagenome; soil
22201
22277
+
Asp
GTC
[ENA]
¢þ
>WENV183696872
OUMM01000019
[OUMM] metagenome; soil
23853
23937
+
Leu
CAA
[ENA]
¢þ
>WENV183696860
OUMM01000007
[OUMM] metagenome; soil
25949
26022
+
Gln
CTG
[ENA]
¢þ
>WENV183696856
OUMM01000002
[OUMM] metagenome; soil
27603
27529
-
Arg
CCT
[ENA]
¢þ
>WENV183696873
OUMM01000019
[OUMM] metagenome; soil
27701
27612
-
Ser
GGA
[ENA]
¢þ
>WENV183696855
OUMM01000002
[OUMM] metagenome; soil
117666
117577
-
Ser
CGA
[ENA]
¢þ
>WENV183696852
OUMM01000002
[OUMM] metagenome; soil
117775
117851
+
Arg
GCG
[ENA]
¢þ
>WENV183696854
OUMM01000002
[OUMM] metagenome; soil
121570
121481
-
Ser
TGA
[ENA]
¢þ
>WENV183696853
OUMM01000002
[OUMM] metagenome; soil
121654
121746
+
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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