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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OUMS] metagenome; soil
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183696961
OUMS01000037
[OUMS] metagenome; soil
11725
11652
-
Phe
GAA
[ENA]
¢þ
>WENV183696935
OUMS01000015
[OUMS] metagenome; soil
11910
11836
-
Glu
TTC
[ENA]
¢þ
>WENV183696962
OUMS01000039
[OUMS] metagenome; soil
12574
12663
+
Ser
GGA
[ENA]
¢þ
>WENV183696951
OUMS01000031
[OUMS] metagenome; soil
16843
16916
+
Gln
TTG
[ENA]
¢þ
>WENV183696952
OUMS01000031
[OUMS] metagenome; soil
16934
17009
+
Glu
TTC
[ENA]
¢þ
>WENV183696915
OUMS01000002
[OUMS] metagenome; soil
23411
23485
+
Ile2
CAT
[ENA]
¢þ
>WENV183696921
OUMS01000007
[OUMS] metagenome; soil
25834
25908
+
Val
GAC
[ENA]
¢þ
>WENV183696914
OUMS01000001
[OUMS] metagenome; soil
49897
49807
-
Ser
GCT
[ENA]
¢þ
>WENV183696940
OUMS01000021
[OUMS] metagenome; soil
49994
49920
-
Arg
CCG
[ENA]
¢þ
>WENV183696954
OUMS01000033
[OUMS] metagenome; soil
57773
57849
+
Pro
TGG
[ENA]
¢þ
>WENV183696930
OUMS01000009
[OUMS] metagenome; soil
65197
65123
-
Val
CAC
[ENA]
¢þ
>WENV183696963
OUMS01000039
[OUMS] metagenome; soil
77298
77389
+
Ser
CGA
[ENA]
¢þ
>WENV183696946
OUMS01000026
[OUMS] metagenome; soil
81323
81249
-
His
GTG
[ENA]
¢þ
>WENV183696916
OUMS01000002
[OUMS] metagenome; soil
89520
89600
+
Leu
CAA
[ENA]
¢þ
>WENV183696964
OUMS01000039
[OUMS] metagenome; soil
100198
100274
+
Arg
ACG
[ENA]
¢þ
>WENV183696960
OUMS01000037
[OUMS] metagenome; soil
104722
104636
-
Leu
TAA
[ENA]
¢þ
>WENV183696945
OUMS01000022
[OUMS] metagenome; soil
105506
105432
-
Met
CAT
[ENA]
¢þ
>WENV183696939
OUMS01000020
[OUMS] metagenome; soil
107871
107796
-
Trp
CCA
[ENA]
¢þ
>WENV183696938
OUMS01000020
[OUMS] metagenome; soil
109327
109253
-
Thr
GGT
[ENA]
¢þ
>WENV183696934
OUMS01000015
[OUMS] metagenome; soil
115682
115608
-
Cys
GCA
[ENA]
¢þ
>WENV183696931
OUMS01000011
[OUMS] metagenome; soil
124557
124629
+
Arg
CCT
[ENA]
¢þ
>WENV183696919
OUMS01000003
[OUMS] metagenome; soil
125716
125640
-
Pro
GGG
[ENA]
¢þ
>WENV183696936
OUMS01000017
[OUMS] metagenome; soil
126262
126335
+
Ala
GGC
[ENA]
¢þ
>WENV183696959
OUMS01000037
[OUMS] metagenome; soil
134784
134711
-
His
GTG
[ENA]
¢þ
>WENV183696944
OUMS01000022
[OUMS] metagenome; soil
135436
135362
-
Val
TAC
[ENA]
¢þ
>WENV183696953
OUMS01000031
[OUMS] metagenome; soil
138893
138810
-
Leu
CAG
[ENA]
¢þ
>WENV183696920
OUMS01000005
[OUMS] metagenome; soil
152912
152996
+
Leu
AAG
[ENA]
¢þ
>WENV183696932
OUMS01000011
[OUMS] metagenome; soil
162160
162084
-
Pro
CGG
[ENA]
¢þ
>WENV183696911
OUMS01000001
[OUMS] metagenome; soil
183719
183794
+
Thr
TGT
[ENA]
¢þ
>WENV183696937
OUMS01000019
[OUMS] metagenome; soil
183763
183690
-
Lys
TTT
[ENA]
¢þ
>WENV183696948
OUMS01000029
[OUMS] metagenome; soil
184162
184249
+
Ser
TGA
[ENA]
¢þ
>WENV183696950
OUMS01000030
[OUMS] metagenome; soil
195247
195320
+
Ala
CGC
[ENA]
¢þ
>WENV183696917
OUMS01000002
[OUMS] metagenome; soil
209706
209790
+
Leu
TAG
[ENA]
¢þ
>WENV183696912
OUMS01000001
[OUMS] metagenome; soil
211515
211591
+
Asp
GTC
[ENA]
¢þ
>WENV183696927
OUMS01000009
[OUMS] metagenome; soil
216372
216447
+
Lys
CTT
[ENA]
¢þ
>WENV183696943
OUMS01000022
[OUMS] metagenome; soil
225623
225550
-
Gly
TCC
[ENA]
¢þ
>WENV183696941
OUMS01000022
[OUMS] metagenome; soil
225791
225864
+
Gly
CCC
[ENA]
¢þ
>WENV183696926
OUMS01000007
[OUMS] metagenome; soil
240714
240639
-
Lys
TTT
[ENA]
¢þ
>WENV183696925
OUMS01000007
[OUMS] metagenome; soil
240812
240737
-
Asn
GTT
[ENA]
¢þ
>WENV183696924
OUMS01000007
[OUMS] metagenome; soil
240908
240831
-
Thr
TGT
[ENA]
¢þ
>WENV183696923
OUMS01000007
[OUMS] metagenome; soil
240990
240916
-
Met
CAT
[ENA]
¢þ
>WENV183696922
OUMS01000007
[OUMS] metagenome; soil
241259
241183
-
fMet
CAT
[ENA]
¢þ
>WENV183696955
OUMS01000035
[OUMS] metagenome; soil
241620
241694
+
Arg
TCT
[ENA]
¢þ
>WENV183696956
OUMS01000037
[OUMS] metagenome; soil
254986
255060
+
Leu
TAG
[ENA]
¢þ
>WENV183696957
OUMS01000037
[OUMS] metagenome; soil
255078
255153
+
Arg
ACG
[ENA]
¢þ
>WENV183696958
OUMS01000037
[OUMS] metagenome; soil
255209
255285
+
Pro
TGG
[ENA]
¢þ
>WENV183696929
OUMS01000009
[OUMS] metagenome; soil
263578
263507
-
Gln
CTG
[ENA]
¢þ
>WENV183696928
OUMS01000009
[OUMS] metagenome; soil
263745
263674
-
Gln
TTG
[ENA]
¢þ
>WENV183696949
OUMS01000029
[OUMS] metagenome; soil
269635
269559
-
fMet
CAT
[ENA]
¢þ
>WENV183696918
OUMS01000002
[OUMS] metagenome; soil
338942
339016
+
Asn
GTT
[ENA]
¢þ
>WENV183696913
OUMS01000001
[OUMS] metagenome; soil
402199
402273
+
Thr
CGT
[ENA]
¢þ
>WENV183696947
OUMS01000027
[OUMS] metagenome; soil
403754
403828
+
Ile
TAT
[ENA]
¢þ
>WENV183696933
OUMS01000015
[OUMS] metagenome; soil
544178
544104
-
Gly
GCC
[ENA]
¢þ
>WENV183696942
OUMS01000022
[OUMS] metagenome; soil
591350
591435
+
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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