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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[PDYI] human gut metagenome; infant gut
HIT:
154 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183722715
PDYI01000031
[PDYI] human gut metagenome; infant gut
94
170
+
Ile
GAT
[ENA]
¢þ
>WENV183722832
PDYI01000659
[PDYI] human gut metagenome; infant gut
144
218
+
Asp
GTC
[ENA]
¢þ
>WENV183722791
PDYI01000429
[PDYI] human gut metagenome; infant gut
169
95
-
Ala
TGC
[ENA]
¢þ
>WENV183722716
PDYI01000031
[PDYI] human gut metagenome; infant gut
199
273
+
Ala
TGC
[ENA]
¢þ
>WENV183722855
PDYI01000754
[PDYI] human gut metagenome; infant gut
233
306
+
Phe
GAA
[ENA]
¢þ
>WENV183722833
PDYI01000659
[PDYI] human gut metagenome; infant gut
250
324
+
Asp
GTC
[ENA]
¢þ
>WENV183722856
PDYI01000763
[PDYI] human gut metagenome; infant gut
252
346
+
SeC
TCA
[ENA]
¢þ
>WENV183722790
PDYI01000429
[PDYI] human gut metagenome; infant gut
253
179
-
Ile
GAT
[ENA]
¢þ
>WENV183722834
PDYI01000659
[PDYI] human gut metagenome; infant gut
356
430
+
Asp
GTC
[ENA]
¢þ
>WENV183722796
PDYI01000443
[PDYI] human gut metagenome; infant gut
448
522
+
Asn
GTT
[ENA]
¢þ
>WENV183722797
PDYI01000443
[PDYI] human gut metagenome; infant gut
551
625
+
Asn
GTT
[ENA]
¢þ
>WENV183722799
PDYI01000490
[PDYI] human gut metagenome; infant gut
582
497
-
Ser
TGA
[ENA]
¢þ
>WENV183722723
PDYI01000067
[PDYI] human gut metagenome; infant gut
647
721
+
Ile2
CAT
[ENA]
¢þ
>WENV183722826
PDYI01000550
[PDYI] human gut metagenome; infant gut
922
998
+
Ile
GAT
[ENA]
¢þ
>WENV183722827
PDYI01000550
[PDYI] human gut metagenome; infant gut
1025
1099
+
Ala
TGC
[ENA]
¢þ
>WENV183722763
PDYI01000249
[PDYI] human gut metagenome; infant gut
1107
1180
+
Gly
GCC
[ENA]
¢þ
>WENV183722830
PDYI01000634
[PDYI] human gut metagenome; infant gut
1110
1183
+
Thr
CGT
[ENA]
¢þ
>WENV183722764
PDYI01000249
[PDYI] human gut metagenome; infant gut
1196
1281
+
Leu
TAA
[ENA]
¢þ
>WENV183722857
PDYI01000798
[PDYI] human gut metagenome; infant gut
1215
1289
+
Ile2
CAT
[ENA]
¢þ
>WENV183722725
PDYI01000117
[PDYI] human gut metagenome; infant gut
1357
1284
-
Lys
TTT
[ENA]
¢þ
>WENV183722798
PDYI01000482
[PDYI] human gut metagenome; infant gut
1377
1452
+
fMet
CAT
[ENA]
¢þ
>WENV183722765
PDYI01000269
[PDYI] human gut metagenome; infant gut
1631
1555
-
Asp
GTC
[ENA]
¢þ
>WENV183722713
PDYI01000028
[PDYI] human gut metagenome; infant gut
1855
1928
+
Phe
GAA
[ENA]
¢þ
>WENV183722714
PDYI01000028
[PDYI] human gut metagenome; infant gut
1940
2013
+
Pro
CGG
[ENA]
¢þ
>WENV183722754
PDYI01000195
[PDYI] human gut metagenome; infant gut
2289
2364
+
Val
TAC
[ENA]
¢þ
>WENV183722760
PDYI01000225
[PDYI] human gut metagenome; infant gut
2323
2396
+
Thr
CGT
[ENA]
¢þ
>WENV183722786
PDYI01000374
[PDYI] human gut metagenome; infant gut
2375
2462
+
Ser
GCT
[ENA]
¢þ
>WENV183722742
PDYI01000175
[PDYI] human gut metagenome; infant gut
2382
2456
+
Ile
GAT
[ENA]
¢þ
>WENV183722755
PDYI01000195
[PDYI] human gut metagenome; infant gut
2399
2476
+
Val
TAC
[ENA]
¢þ
>WENV183722774
PDYI01000346
[PDYI] human gut metagenome; infant gut
2448
2522
+
Ile
GAT
[ENA]
¢þ
>WENV183722819
PDYI01000541
[PDYI] human gut metagenome; infant gut
2467
2543
+
Ile
GAT
[ENA]
¢þ
>WENV183722743
PDYI01000175
[PDYI] human gut metagenome; infant gut
2471
2545
+
Ala
TGC
[ENA]
¢þ
>WENV183722775
PDYI01000346
[PDYI] human gut metagenome; infant gut
2537
2611
+
Ala
TGC
[ENA]
¢þ
>WENV183722787
PDYI01000374
[PDYI] human gut metagenome; infant gut
2540
2612
+
Glu
CTC
[ENA]
¢þ
>WENV183722820
PDYI01000541
[PDYI] human gut metagenome; infant gut
2572
2646
+
Ala
TGC
[ENA]
¢þ
>WENV183722768
PDYI01000322
[PDYI] human gut metagenome; infant gut
2588
2502
-
Ser
TGA
[ENA]
¢þ
>WENV183722722
PDYI01000063
[PDYI] human gut metagenome; infant gut
2604
2532
-
Glu
CTC
[ENA]
¢þ
>WENV183722721
PDYI01000063
[PDYI] human gut metagenome; infant gut
2758
2671
-
Ser
GCT
[ENA]
¢þ
>WENV183722766
PDYI01000282
[PDYI] human gut metagenome; infant gut
2882
2957
+
Pro
GGG
[ENA]
¢þ
>WENV183722825
PDYI01000549
[PDYI] human gut metagenome; infant gut
3160
3234
+
Ile2
CAT
[ENA]
¢þ
>WENV183722829
PDYI01000551
[PDYI] human gut metagenome; infant gut
3395
3322
-
Pro
CGG
[ENA]
¢þ
>WENV183722828
PDYI01000551
[PDYI] human gut metagenome; infant gut
3589
3664
+
Phe
GAA
[ENA]
¢þ
>WENV183722751
PDYI01000191
[PDYI] human gut metagenome; infant gut
3733
3809
+
Ile
GAT
[ENA]
¢þ
>WENV183722758
PDYI01000206
[PDYI] human gut metagenome; infant gut
3738
3656
-
Leu
TAG
[ENA]
¢þ
>WENV183722752
PDYI01000191
[PDYI] human gut metagenome; infant gut
3838
3912
+
Ala
TGC
[ENA]
¢þ
>WENV183722724
PDYI01000095
[PDYI] human gut metagenome; infant gut
3964
3890
-
Thr
TGT
[ENA]
¢þ
>WENV183722784
PDYI01000366
[PDYI] human gut metagenome; infant gut
4063
4138
+
Pro
TGG
[ENA]
¢þ
>WENV183722785
PDYI01000366
[PDYI] human gut metagenome; infant gut
4175
4250
+
Pro
TGG
[ENA]
¢þ
>WENV183722831
PDYI01000645
[PDYI] human gut metagenome; infant gut
4489
4562
+
Arg
CCT
[ENA]
¢þ
>WENV183722767
PDYI01000297
[PDYI] human gut metagenome; infant gut
4718
4792
+
Ile2
CAT
[ENA]
¢þ
>WENV183722788
PDYI01000398
[PDYI] human gut metagenome; infant gut
4940
4855
-
Leu
CAG
[ENA]
¢þ
>WENV183722778
PDYI01000352
[PDYI] human gut metagenome; infant gut
5114
5042
-
Cys
GCA
[ENA]
¢þ
>WENV183722779
PDYI01000359
[PDYI] human gut metagenome; infant gut
5168
5095
-
Trp
CCA
[ENA]
¢þ
>WENV183722815
PDYI01000516
[PDYI] human gut metagenome; infant gut
5344
5273
-
Gln
CTG
[ENA]
¢þ
>WENV183722759
PDYI01000209
[PDYI] human gut metagenome; infant gut
5670
5746
+
Met
CAT
[ENA]
¢þ
>WENV183722789
PDYI01000418
[PDYI] human gut metagenome; infant gut
5825
5898
+
Lys
TTT
[ENA]
¢þ
>WENV183722749
PDYI01000188
[PDYI] human gut metagenome; infant gut
5998
6071
+
Lys
TTT
[ENA]
¢þ
>WENV183722823
PDYI01000544
[PDYI] human gut metagenome; infant gut
6062
5988
-
Arg
TCT
[ENA]
¢þ
>WENV183722808
PDYI01000510
[PDYI] human gut metagenome; infant gut
6264
6338
+
Ile
GAT
[ENA]
¢þ
>WENV183722809
PDYI01000510
[PDYI] human gut metagenome; infant gut
6353
6427
+
Ala
TGC
[ENA]
¢þ
>WENV183722762
PDYI01000241
[PDYI] human gut metagenome; infant gut
6434
6508
+
Ala
GGC
[ENA]
¢þ
>WENV183722795
PDYI01000433
[PDYI] human gut metagenome; infant gut
6467
6391
-
Pro
TGG
[ENA]
¢þ
>WENV183722794
PDYI01000433
[PDYI] human gut metagenome; infant gut
6596
6510
-
Leu
CAG
[ENA]
¢þ
>WENV183722805
PDYI01000503
[PDYI] human gut metagenome; infant gut
6652
6580
-
Arg
CCT
[ENA]
¢þ
>WENV183722793
PDYI01000433
[PDYI] human gut metagenome; infant gut
6692
6617
-
His
GTG
[ENA]
¢þ
>WENV183722821
PDYI01000542
[PDYI] human gut metagenome; infant gut
6779
6706
-
Phe
GAA
[ENA]
¢þ
>WENV183722792
PDYI01000433
[PDYI] human gut metagenome; infant gut
6827
6751
-
Arg
CCG
[ENA]
¢þ
>WENV183722761
PDYI01000227
[PDYI] human gut metagenome; infant gut
7182
7110
-
Arg
CCT
[ENA]
¢þ
>WENV183722720
PDYI01000062
[PDYI] human gut metagenome; infant gut
7599
7687
+
Ser
GGA
[ENA]
¢þ
>WENV183722756
PDYI01000203
[PDYI] human gut metagenome; infant gut
8091
8165
+
Asp
GTC
[ENA]
¢þ
>WENV183722757
PDYI01000203
[PDYI] human gut metagenome; infant gut
8195
8269
+
Asp
GTC
[ENA]
¢þ
>WENV183722824
PDYI01000546
[PDYI] human gut metagenome; infant gut
8510
8438
-
Arg
CCT
[ENA]
¢þ
>WENV183722748
PDYI01000186
[PDYI] human gut metagenome; infant gut
11614
11686
+
Glu
TTC
[ENA]
¢þ
>WENV183722711
PDYI01000006
[PDYI] human gut metagenome; infant gut
12694
12767
+
Thr
CGT
[ENA]
¢þ
>WENV183722718
PDYI01000040
[PDYI] human gut metagenome; infant gut
12888
12961
+
Gly
GCC
[ENA]
¢þ
>WENV183722719
PDYI01000040
[PDYI] human gut metagenome; infant gut
12975
13059
+
Leu
TAA
[ENA]
¢þ
>WENV183722750
PDYI01000189
[PDYI] human gut metagenome; infant gut
14567
14496
-
Gln
TTG
[ENA]
¢þ
>WENV183722845
PDYI01000686
[PDYI] human gut metagenome; infant gut
16131
16204
+
Gly
GCC
[ENA]
¢þ
>WENV183722846
PDYI01000686
[PDYI] human gut metagenome; infant gut
16251
16332
+
Leu
CAG
[ENA]
¢þ
>WENV183722847
PDYI01000686
[PDYI] human gut metagenome; infant gut
16356
16440
+
Leu
GAG
[ENA]
¢þ
>WENV183722848
PDYI01000686
[PDYI] human gut metagenome; infant gut
16456
16529
+
Gly
GCC
[ENA]
¢þ
>WENV183722849
PDYI01000686
[PDYI] human gut metagenome; infant gut
16576
16657
+
Leu
CAG
[ENA]
¢þ
>WENV183722850
PDYI01000686
[PDYI] human gut metagenome; infant gut
16672
16745
+
Gly
GCC
[ENA]
¢þ
>WENV183722807
PDYI01000505
[PDYI] human gut metagenome; infant gut
18154
18080
-
Thr
TGT
[ENA]
¢þ
>WENV183722717
PDYI01000031
[PDYI] human gut metagenome; infant gut
18410
18337
-
fMet
CAT
[ENA]
¢þ
>WENV183722746
PDYI01000179
[PDYI] human gut metagenome; infant gut
18651
18576
-
Lys
TTT
[ENA]
¢þ
>WENV183722745
PDYI01000177
[PDYI] human gut metagenome; infant gut
19043
18969
-
Arg
TCT
[ENA]
¢þ
>WENV183722817
PDYI01000527
[PDYI] human gut metagenome; infant gut
19348
19275
-
Lys
CTT
[ENA]
¢þ
>WENV183722776
PDYI01000348
[PDYI] human gut metagenome; infant gut
19630
19704
+
Ile
GAT
[ENA]
¢þ
>WENV183722777
PDYI01000348
[PDYI] human gut metagenome; infant gut
19719
19793
+
Ala
TGC
[ENA]
¢þ
>WENV183722816
PDYI01000518
[PDYI] human gut metagenome; infant gut
20593
20519
-
Thr
TGT
[ENA]
¢þ
>WENV183722744
PDYI01000176
[PDYI] human gut metagenome; infant gut
22097
22025
-
Arg
CCG
[ENA]
¢þ
>WENV183722851
PDYI01000689
[PDYI] human gut metagenome; infant gut
22857
22932
+
Val
TAC
[ENA]
¢þ
>WENV183722852
PDYI01000689
[PDYI] human gut metagenome; infant gut
22961
23036
+
Val
TAC
[ENA]
¢þ
>WENV183722739
PDYI01000173
[PDYI] human gut metagenome; infant gut
23056
23130
+
Asp
GTC
[ENA]
¢þ
>WENV183722853
PDYI01000689
[PDYI] human gut metagenome; infant gut
23087
23162
+
Val
TAC
[ENA]
¢þ
>WENV183722740
PDYI01000173
[PDYI] human gut metagenome; infant gut
23162
23236
+
Asp
GTC
[ENA]
¢þ
>WENV183722783
PDYI01000363
[PDYI] human gut metagenome; infant gut
23208
23135
-
Trp
CCA
[ENA]
¢þ
>WENV183722810
PDYI01000510
[PDYI] human gut metagenome; infant gut
23218
23136
-
Leu
TAG
[ENA]
¢þ
>WENV183722741
PDYI01000173
[PDYI] human gut metagenome; infant gut
23268
23342
+
Asp
GTC
[ENA]
¢þ
>WENV183722822
PDYI01000543
[PDYI] human gut metagenome; infant gut
23638
23711
+
Lys
CTT
[ENA]
¢þ
>WENV183722838
PDYI01000676
[PDYI] human gut metagenome; infant gut
23927
23854
-
Glu
CTC
[ENA]
¢þ
>WENV183722837
PDYI01000676
[PDYI] human gut metagenome; infant gut
24274
24187
-
Ser
GCT
[ENA]
¢þ
>WENV183722841
PDYI01000677
[PDYI] human gut metagenome; infant gut
24566
24493
-
Lys
CTT
[ENA]
¢þ
>WENV183722782
PDYI01000363
[PDYI] human gut metagenome; infant gut
24568
24496
-
Thr
GGT
[ENA]
¢þ
>WENV183722840
PDYI01000677
[PDYI] human gut metagenome; infant gut
24660
24587
-
Lys
CTT
[ENA]
¢þ
>WENV183722839
PDYI01000677
[PDYI] human gut metagenome; infant gut
24758
24685
-
Lys
CTT
[ENA]
¢þ
>WENV183722781
PDYI01000363
[PDYI] human gut metagenome; infant gut
24765
24682
-
Tyr
GTA
[ENA]
¢þ
>WENV183722780
PDYI01000363
[PDYI] human gut metagenome; infant gut
24913
24839
-
Thr
TGT
[ENA]
¢þ
>WENV183722818
PDYI01000532
[PDYI] human gut metagenome; infant gut
25987
25902
-
Ser
TGA
[ENA]
¢þ
>WENV183722844
PDYI01000685
[PDYI] human gut metagenome; infant gut
26082
26156
+
Asp
GTC
[ENA]
¢þ
>WENV183722836
PDYI01000676
[PDYI] human gut metagenome; infant gut
26870
26797
-
Cys
GCA
[ENA]
¢þ
>WENV183722854
PDYI01000690
[PDYI] human gut metagenome; infant gut
28534
28608
+
Asp
GTC
[ENA]
¢þ
>WENV183722813
PDYI01000514
[PDYI] human gut metagenome; infant gut
30386
30474
+
Ser
GGA
[ENA]
¢þ
>WENV183722753
PDYI01000192
[PDYI] human gut metagenome; infant gut
32004
32089
+
Ser
TGA
[ENA]
¢þ
>WENV183722712
PDYI01000023
[PDYI] human gut metagenome; infant gut
32812
32895
+
Tyr
GTA
[ENA]
¢þ
>WENV183722806
PDYI01000505
[PDYI] human gut metagenome; infant gut
32816
32899
+
Tyr
GTA
[ENA]
¢þ
>WENV183722842
PDYI01000681
[PDYI] human gut metagenome; infant gut
33077
33151
+
Ala
GGC
[ENA]
¢þ
>WENV183722706
PDYI01000001
[PDYI] human gut metagenome; infant gut
35981
35908
-
Trp
CCA
[ENA]
¢þ
>WENV183722811
PDYI01000513
[PDYI] human gut metagenome; infant gut
36756
36830
+
Ile
GAT
[ENA]
¢þ
>WENV183722812
PDYI01000513
[PDYI] human gut metagenome; infant gut
36845
36919
+
Ala
TGC
[ENA]
¢þ
>WENV183722735
PDYI01000169
[PDYI] human gut metagenome; infant gut
37491
37418
-
Pro
CGG
[ENA]
¢þ
>WENV183722734
PDYI01000169
[PDYI] human gut metagenome; infant gut
37673
37748
+
Phe
GAA
[ENA]
¢þ
>WENV183722835
PDYI01000671
[PDYI] human gut metagenome; infant gut
37999
37928
-
Gln
TTG
[ENA]
¢þ
>WENV183722843
PDYI01000684
[PDYI] human gut metagenome; infant gut
41466
41382
-
Leu
CAA
[ENA]
¢þ
>WENV183722747
PDYI01000185
[PDYI] human gut metagenome; infant gut
42998
43071
+
Gly
CCC
[ENA]
¢þ
>WENV183722814
PDYI01000516
[PDYI] human gut metagenome; infant gut
47577
47652
+
Pro
GGG
[ENA]
¢þ
>WENV183722704
PDYI01000001
[PDYI] human gut metagenome; infant gut
49608
49693
+
Ser
TGA
[ENA]
¢þ
>WENV183722710
PDYI01000004
[PDYI] human gut metagenome; infant gut
51361
51286
-
Pro
TGG
[ENA]
¢þ
>WENV183722733
PDYI01000168
[PDYI] human gut metagenome; infant gut
53468
53395
-
Trp
CCA
[ENA]
¢þ
>WENV183722738
PDYI01000172
[PDYI] human gut metagenome; infant gut
53726
53641
-
Ser
TGA
[ENA]
¢þ
>WENV183722732
PDYI01000168
[PDYI] human gut metagenome; infant gut
54835
54763
-
Thr
GGT
[ENA]
¢þ
>WENV183722731
PDYI01000168
[PDYI] human gut metagenome; infant gut
55032
54949
-
Tyr
GTA
[ENA]
¢þ
>WENV183722730
PDYI01000168
[PDYI] human gut metagenome; infant gut
55151
55077
-
Thr
TGT
[ENA]
¢þ
>WENV183722772
PDYI01000337
[PDYI] human gut metagenome; infant gut
63492
63566
+
Thr
TGT
[ENA]
¢þ
>WENV183722771
PDYI01000336
[PDYI] human gut metagenome; infant gut
65396
65321
-
Pro
GGG
[ENA]
¢þ
>WENV183722726
PDYI01000168
[PDYI] human gut metagenome; infant gut
68260
68334
+
Asn
GTT
[ENA]
¢þ
>WENV183722727
PDYI01000168
[PDYI] human gut metagenome; infant gut
68358
68432
+
Asn
GTT
[ENA]
¢þ
>WENV183722736
PDYI01000170
[PDYI] human gut metagenome; infant gut
72920
72846
-
Ile2
CAT
[ENA]
¢þ
>WENV183722707
PDYI01000002
[PDYI] human gut metagenome; infant gut
75213
75287
+
Met
CAT
[ENA]
¢þ
>WENV183722708
PDYI01000002
[PDYI] human gut metagenome; infant gut
75348
75422
+
Met
CAT
[ENA]
¢þ
>WENV183722737
PDYI01000172
[PDYI] human gut metagenome; infant gut
80202
80276
+
Glu
TTC
[ENA]
¢þ
>WENV183722800
PDYI01000503
[PDYI] human gut metagenome; infant gut
81526
81599
+
Gly
GCC
[ENA]
¢þ
>WENV183722801
PDYI01000503
[PDYI] human gut metagenome; infant gut
81615
81700
+
Leu
TAA
[ENA]
¢þ
>WENV183722709
PDYI01000004
[PDYI] human gut metagenome; infant gut
92115
92042
-
Gly
CCC
[ENA]
¢þ
>WENV183722769
PDYI01000336
[PDYI] human gut metagenome; infant gut
99192
99263
+
Gln
CTG
[ENA]
¢þ
>WENV183722770
PDYI01000336
[PDYI] human gut metagenome; infant gut
123545
123633
+
Ser
GGA
[ENA]
¢þ
>WENV183722773
PDYI01000337
[PDYI] human gut metagenome; infant gut
131973
132046
+
fMet
CAT
[ENA]
¢þ
>WENV183722729
PDYI01000168
[PDYI] human gut metagenome; infant gut
154438
154354
-
Leu
CAA
[ENA]
¢þ
>WENV183722705
PDYI01000001
[PDYI] human gut metagenome; infant gut
168815
168889
+
His
GTG
[ENA]
¢þ
>WENV183722804
PDYI01000503
[PDYI] human gut metagenome; infant gut
206546
206471
-
Phe
GAA
[ENA]
¢þ
>WENV183722728
PDYI01000168
[PDYI] human gut metagenome; infant gut
209670
209742
+
Glu
TTC
[ENA]
¢þ
>WENV183722802
PDYI01000503
[PDYI] human gut metagenome; infant gut
218102
218176
+
Ile
GAT
[ENA]
¢þ
>WENV183722803
PDYI01000503
[PDYI] human gut metagenome; infant gut
218191
218265
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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