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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
viral fraction from Sargasso Sea
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV08000295
ABLZ01013433
viral fraction from Sargasso Sea
11
86
+
Trp
CCA
[ENA]
¡û
>ENV08000296
ABLZ01016790
viral fraction from Sargasso Sea
11
87
+
Lys
TTT
[ENA]
¡û
>ENV08000297
ABLZ01026833
viral fraction from Sargasso Sea
13
88
+
Gln
TTG
[ENA]
¡û
>ENV08000298
ABLZ01028087
viral fraction from Sargasso Sea
14
101
+
Asn
GTT
[ENA]
¡û
>ENV08000299
ABLZ01049565
viral fraction from Sargasso Sea
74
3
-
Asn
GTT
[ENA]
¡û
>ENV08000300
ABLZ01065972
viral fraction from Sargasso Sea
12
84
+
Gln
TTG
[ENA]
¡û
>ENV08000301
ABLZ01068358
viral fraction from Sargasso Sea
2
77
+
Ala
TGC
[ENA]
¡û
>ENV08000302
ABLZ01071936
viral fraction from Sargasso Sea
105
29
-
Arg
TCT
[ENA]
¡û
>ENV08000303
ABLZ01085629
viral fraction from Sargasso Sea
13
85
+
Pseudo
CAT
[ENA]
¡û
>ENV08000304
ABLZ01086043
viral fraction from Sargasso Sea
3
76
+
Ile
TAT
[ENA]
¡û
>ENV08000305
ABLZ01087136
viral fraction from Sargasso Sea
4
78
+
Asn
GTT
[ENA]
¡û
>ENV08000306
ABLZ01092140
viral fraction from Sargasso Sea
33
106
+
Lys
TTT
[ENA]
¡û
>ENV08000307
ABLZ01093860
viral fraction from Sargasso Sea
27
103
+
Arg
TCT
[ENA]
¡û
>ENV08000308
ABLZ01095686
viral fraction from Sargasso Sea
34
105
+
Arg
TCT
[ENA]
¡û
>ENV08000309
ABLZ01103107
viral fraction from Sargasso Sea
96
24
-
Thr
TGT
[ENA]
¡û
>ENV08000310
ABLZ01103316
viral fraction from Sargasso Sea
13
89
+
Arg
TCT
[ENA]
¡û
>ENV08000311
ABLZ01103387
viral fraction from Sargasso Sea
100
24
-
Ile
TAT
[ENA]
¡û
>ENV08000312
ABLZ01105494
viral fraction from Sargasso Sea
39
112
+
Gln
TTG
[ENA]
¡û
>ENV08000313
ABLZ01106040
viral fraction from Sargasso Sea
93
17
-
Arg
TCT
[ENA]
¡û
>ENV08000314
ABLZ01113454
viral fraction from Sargasso Sea
13
89
+
Arg
TCT
[ENA]
¡û
>ENV08000315
ABLZ01114192
viral fraction from Sargasso Sea
99
12
-
Leu
TAA
[ENA]
¡û
>ENV08000316
ABLZ01125289
viral fraction from Sargasso Sea
89
17
-
Asn
GTT
[ENA]
¡û
>ENV08000317
ABLZ01134963
viral fraction from Sargasso Sea
92
18
-
Arg
ACG
[ENA]
¡û
>ENV08000318
ABLZ01138246
viral fraction from Sargasso Sea
100
29
-
Gly
TCC
[ENA]
¡û
>ENV08000319
ABLZ01143039
viral fraction from Sargasso Sea
106
21
-
Leu
TAA
[ENA]
¡û
>ENV08000320
ABLZ01144310
viral fraction from Sargasso Sea
93
19
-
Cys
GCA
[ENA]
¡û
>ENV08000321
ABLZ01147756
viral fraction from Sargasso Sea
31
104
+
Asn
GTT
[ENA]
¡û
>ENV08000322
ABLZ01149418
viral fraction from Sargasso Sea
14
90
+
Arg
TCT
[ENA]
¡û
>ENV08000323
ABLZ01156830
viral fraction from Sargasso Sea
31
104
+
Asn
GTT
[ENA]
¡û
>ENV08000324
ABLZ01159886
viral fraction from Sargasso Sea
16
92
+
Arg
TCT
[ENA]
¡û
>ENV08000325
ABLZ01160742
viral fraction from Sargasso Sea
6
79
+
Thr
TGT
[ENA]
¡û
>ENV08000326
ABLZ01168845
viral fraction from Sargasso Sea
33
108
+
Arg
ACG
[ENA]
¡û
>ENV08000327
ABLZ01186000
viral fraction from Sargasso Sea
100
24
-
Arg
TCT
[ENA]
¡û
>ENV08000328
ABLZ01189753
viral fraction from Sargasso Sea
104
28
-
Met
CAT
[ENA]
¡û
>ENV08000329
ABLZ01191608
viral fraction from Sargasso Sea
6
79
+
Thr
TGT
[ENA]
¡û
>ENV08000330
ABLZ01220826
viral fraction from Sargasso Sea
10
86
+
Arg
TCT
[ENA]
¡û
>ENV08000331
ABLZ01235188
viral fraction from Sargasso Sea
97
22
-
Arg
TCT
[ENA]
¡û
>ENV08000332
ABLZ01260330
viral fraction from Sargasso Sea
101
26
-
Gly
TCC
[ENA]
¡û
>ENV08000333
ABLZ01270257
viral fraction from Sargasso Sea
8
81
+
Asp
GTC
[ENA]
¡û
>ENV08000334
ABLZ01301696
viral fraction from Sargasso Sea
9
95
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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